View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_128 (Length: 215)
Name: NF10841_low_128
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_128 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 55966962 - 55966748
Alignment:
| Q |
1 |
ctaagattttgactcttcgtgataactcaactacattgaactcttttgattttggatgtaatgaaattattgggcctgaagtcgtccaaaagattttaga |
100 |
Q |
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| T |
55966962 |
ctaagatttcgactcttcgtgataactcaactacattgaactcttttgattttggatgtaatgaaattattgggcctgaagtcatccaaaagattttaga |
55966863 |
T |
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| Q |
101 |
ttatgtttgttcccacaatacccaactccaacaattaaaaatcactattcgtggtgattgtgttctagttatgccatgtgtttctttatgtcaggctctt |
200 |
Q |
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| T |
55966862 |
ttatgtttgttcccataatacccaactccaacaattaaaaatcgctattcgtggtgattgtggtctagttaggccatgtgtttctttatgtcaggctctt |
55966763 |
T |
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| Q |
201 |
acatcctttcaactt |
215 |
Q |
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|||||| | |||||| |
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| T |
55966762 |
acatccctgcaactt |
55966748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 18083291 - 18083349
Alignment:
| Q |
85 |
tccaaaagattttagattatgtttgttcccacaatacccaactccaacaattaaaaatc |
143 |
Q |
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| T |
18083291 |
tccaaaagattttagattatgtttattcccataaaaccaaactccaacgattaagaatc |
18083349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 36617390 - 36617332
Alignment:
| Q |
85 |
tccaaaagattttagattatgtttgttcccacaatacccaactccaacaattaaaaatc |
143 |
Q |
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| T |
36617390 |
tccaaaagattttagattatgtttattcccataaaaccaaactccaacgattaagaatc |
36617332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36668547 - 36668510
Alignment:
| Q |
1 |
ctaagattttgactcttcgtgataactcaactacattg |
38 |
Q |
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| T |
36668547 |
ctaagattttgactcttcgtgatagctcaactgcattg |
36668510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 33844131 - 33844010
Alignment:
| Q |
84 |
gtccaaaagattttagattatgtttgttcccacaatacccaactccaacaattaaaaatcactattcgtggtgattgtgttctagttatgccatgtgttt |
183 |
Q |
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|||| ||| |||||| |||| ||| ||||||| ||||||||| ||||||||||| |||| ||||| | ||||| ||| ||| ||||||||||||| | |
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| T |
33844131 |
gtcccaaaaattttaaattacgttcgttcccataatacccaaatccaacaattaggaatctctattactcgtgatagtgatctccttatgccatgtgtgt |
33844032 |
T |
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| Q |
184 |
ctttatgtcaggctcttacatc |
205 |
Q |
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||| ||||| |||||||||||| |
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| T |
33844031 |
cttcatgtctggctcttacatc |
33844010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 33840222 - 33840018
Alignment:
| Q |
1 |
ctaagattttgactcttcgtgataactcaactacattgaactcttttgattttggatgtaat-gaaattattgggcctgaagtcgtccaaaagattttag |
99 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||| || | ||||||||| || || | |||| | | ||||| | |||||||| |||||| |
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| T |
33840222 |
ctaagattttgactcttcgtgataactcagctgcattgcacattcttgattttgagtgcgatagcgatta-cgagtctgaactggtccaaaaaattttaa |
33840124 |
T |
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| Q |
100 |
attatgtttgttcccacaatacccaactccaacaattaaaaatcactattcgtggtgattgtgttctagttatgccatgtgtttctttatgtcaggctct |
199 |
Q |
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|||| | |||||||| ||||| ||| ||||||||||| |||| ||||| | |||| ||| ||| ||||||||||||| || | |||||||||||| |
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| T |
33840123 |
attacgcgtgttcccataatacacaaatccaacaattaggaatctctatttctcatgatagtgatctccttatgccatgtgtgtcctcatgtcaggctct |
33840024 |
T |
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| Q |
200 |
tacatc |
205 |
Q |
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|||||| |
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| T |
33840023 |
tacatc |
33840018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33844214 - 33844186
Alignment:
| Q |
1 |
ctaagattttgactcttcgtgataactca |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33844214 |
ctaagattttgactcttcgtgataactca |
33844186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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