View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_129 (Length: 214)
Name: NF10841_low_129
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_129 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 41703162 - 41702967
Alignment:
| Q |
1 |
caaaagtatgatatcttcctccaatgttgctgctctttcacgcactcgaataaacttcctcttcctcttcaaagccttaagtaatatctccacttcgcac |
100 |
Q |
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| T |
41703162 |
caaaagtatgatatcttcctccgatgttgctgctctttcacccactcgaataaacttcctgttcctcttcaaagccttaagtaatatctccacttcgcac |
41703063 |
T |
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| Q |
101 |
ttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaattttaatctgt |
196 |
Q |
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| T |
41703062 |
ttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaattttactctgt |
41702967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 41469392 - 41469579
Alignment:
| Q |
1 |
caaaagtatgatatcttcctccaatgttgctgctctttcacgcactcgaataaacttcctcttcctcttcaaagccttaagtaatatctccacttcgcac |
100 |
Q |
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| T |
41469392 |
caaaagaatgagatcttcctccaacgttgttactctttcacgcagtcgaataaacttc------ctcttcaaagcctcaagtaatgtctcggcttcgcgc |
41469485 |
T |
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| Q |
101 |
ttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaattttaatct |
194 |
Q |
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| T |
41469486 |
ttctcctctgccaatttcctgctttcatgcctcaagtcactcatcattaccaaattcttctttgctgtttccttcaattcatcatttttaatct |
41469579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 41547556 - 41547604
Alignment:
| Q |
146 |
gttgccaaattcttctttactgtttcctccaattctccaattttaatct |
194 |
Q |
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| T |
41547556 |
gttgccaaattcttgtttactgtttcattcaattcaccatttttaatct |
41547604 |
T |
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