View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_13 (Length: 413)

Name: NF10841_low_13
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_13
NF10841_low_13
[»] chr6 (40 HSPs)
chr6 (20-403)||(19277024-19277405)
chr6 (285-399)||(34064220-34064334)
chr6 (138-398)||(19730544-19730795)
chr6 (284-395)||(9403196-9403307)
chr6 (159-401)||(12449533-12449767)
chr6 (282-401)||(27860898-27861017)
chr6 (284-400)||(31295486-31295602)
chr6 (148-377)||(22497272-22497492)
chr6 (285-401)||(12424264-12424380)
chr6 (282-401)||(16343601-16343720)
chr6 (284-382)||(19305488-19305586)
chr6 (309-377)||(12487970-12488038)
chr6 (292-402)||(18566689-18566799)
chr6 (284-374)||(23768217-23768307)
chr6 (284-401)||(689808-689924)
chr6 (325-401)||(18994044-18994120)
chr6 (282-379)||(34187321-34187413)
chr6 (319-401)||(13823330-13823410)
chr6 (284-388)||(18147330-18147434)
chr6 (284-379)||(20148341-20148434)
chr6 (284-379)||(22184394-22184487)
chr6 (333-384)||(14184523-14184574)
chr6 (314-400)||(14921212-14921298)
chr6 (285-383)||(16130993-16131091)
chr6 (37-99)||(19294757-19294819)
chr6 (292-401)||(22572077-22572185)
chr6 (282-382)||(3404831-3404931)
chr6 (286-402)||(17380123-17380239)
chr6 (292-387)||(33596893-33596988)
chr6 (287-401)||(11087529-11087643)
chr6 (294-382)||(31423806-31423894)
chr6 (284-378)||(15480314-15480408)
chr6 (138-228)||(9403063-9403153)
chr6 (284-338)||(14080508-14080561)
chr6 (284-326)||(25008415-25008457)
chr6 (284-382)||(34572963-34573061)
chr6 (284-381)||(9291990-9292086)
chr6 (284-377)||(10115659-10115752)
chr6 (285-361)||(4251034-4251110)
chr6 (343-379)||(27772537-27772573)
[»] chr7 (25 HSPs)
chr7 (167-401)||(13292073-13292299)
chr7 (139-401)||(16987042-16987296)
chr7 (284-396)||(34854267-34854379)
chr7 (181-401)||(9135311-9135523)
chr7 (220-400)||(12644753-12644926)
chr7 (285-401)||(5925425-5925541)
chr7 (282-371)||(5928991-5929080)
chr7 (284-385)||(10287562-10287663)
chr7 (138-283)||(9867998-9868144)
chr7 (321-384)||(12265092-12265155)
chr7 (292-401)||(18774013-18774122)
chr7 (325-381)||(4781470-4781526)
chr7 (325-381)||(4813901-4813957)
chr7 (319-401)||(20034374-20034456)
chr7 (284-400)||(1979086-1979202)
chr7 (284-397)||(5863211-5863324)
chr7 (284-382)||(26762880-26762978)
chr7 (148-259)||(12265176-12265287)
chr7 (303-383)||(29373489-29373569)
chr7 (322-382)||(43172005-43172065)
chr7 (326-401)||(17150026-17150101)
chr7 (284-338)||(39879411-39879465)
chr7 (309-378)||(16204340-16204409)
chr7 (292-374)||(7486577-7486659)
chr7 (306-378)||(16203768-16203840)
[»] scaffold0205 (2 HSPs)
scaffold0205 (146-400)||(10866-11112)
scaffold0205 (284-401)||(22910-23027)
[»] chr5 (18 HSPs)
chr5 (166-401)||(25537319-25537546)
chr5 (159-398)||(22865668-22865899)
chr5 (292-394)||(24647320-24647422)
chr5 (320-402)||(31202324-31202407)
chr5 (294-376)||(25828963-25829045)
chr5 (309-401)||(24546391-24546483)
chr5 (323-401)||(21213306-21213384)
chr5 (284-383)||(26994574-26994673)
chr5 (325-403)||(18799844-18799922)
chr5 (284-376)||(22903117-22903209)
chr5 (325-400)||(25679197-25679272)
chr5 (333-381)||(26348061-26348109)
chr5 (284-401)||(25333759-25333876)
chr5 (325-380)||(18803982-18804037)
chr5 (159-283)||(31202487-31202612)
chr5 (303-383)||(20025326-20025406)
chr5 (304-377)||(32418460-32418533)
chr5 (306-383)||(27083206-27083283)
[»] chr3 (25 HSPs)
chr3 (128-376)||(12731536-12731776)
chr3 (292-401)||(14860049-14860158)
chr3 (150-401)||(12516083-12516326)
chr3 (159-401)||(25495846-25496079)
chr3 (287-397)||(16704429-16704539)
chr3 (284-383)||(30606952-30607051)
chr3 (284-401)||(1770849-1770967)
chr3 (326-402)||(20118926-20119002)
chr3 (314-401)||(20122729-20122816)
chr3 (282-379)||(9801056-9801153)
chr3 (284-400)||(431267-431383)
chr3 (284-395)||(12108443-12108554)
chr3 (282-343)||(12252010-12252071)
chr3 (284-376)||(17143724-17143816)
chr3 (292-374)||(28715465-28715547)
chr3 (282-343)||(9781514-9781575)
chr3 (284-387)||(28723738-28723841)
chr3 (284-378)||(21342260-21342354)
chr3 (333-377)||(17396796-17396840)
chr3 (284-401)||(17485576-17485691)
chr3 (321-376)||(20622469-20622524)
chr3 (303-383)||(2311802-2311882)
chr3 (303-403)||(7835522-7835622)
chr3 (284-353)||(21652666-21652735)
chr3 (159-259)||(14860183-14860283)
[»] chr1 (21 HSPs)
chr1 (133-401)||(4601437-4601697)
chr1 (284-400)||(23728771-23728887)
chr1 (149-395)||(14254998-14255224)
chr1 (148-403)||(21682538-21682785)
chr1 (284-401)||(25408120-25408237)
chr1 (193-403)||(26977681-26977883)
chr1 (282-401)||(12177408-12177527)
chr1 (321-403)||(21098794-21098876)
chr1 (325-401)||(3590891-3590968)
chr1 (201-379)||(22414724-22414894)
chr1 (284-378)||(1659762-1659856)
chr1 (285-377)||(16299555-16299640)
chr1 (284-378)||(34273111-34273205)
chr1 (333-401)||(48637612-48637680)
chr1 (284-338)||(5671794-5671848)
chr1 (284-401)||(52565604-52565719)
chr1 (284-381)||(16030419-16030516)
chr1 (284-376)||(23280237-23280327)
chr1 (296-388)||(16050430-16050522)
chr1 (284-383)||(33101475-33101574)
chr1 (284-375)||(18246167-18246257)
[»] chr4 (20 HSPs)
chr4 (146-401)||(15742103-15742350)
chr4 (284-401)||(15514511-15514628)
chr4 (284-401)||(5518564-5518681)
chr4 (191-401)||(12683725-12683926)
chr4 (284-377)||(14601989-14602082)
chr4 (284-394)||(16012429-16012538)
chr4 (285-401)||(1638268-1638384)
chr4 (284-383)||(47253301-47253400)
chr4 (317-403)||(25066201-25066287)
chr4 (287-403)||(19643729-19643845)
chr4 (292-401)||(13896429-13896538)
chr4 (314-401)||(18463854-18463941)
chr4 (284-383)||(29157126-29157225)
chr4 (319-384)||(17110756-17110821)
chr4 (325-378)||(19564026-19564079)
chr4 (309-401)||(2674524-2674616)
chr4 (284-383)||(19809725-19809824)
chr4 (325-382)||(12415500-12415557)
chr4 (343-380)||(50151775-50151812)
chr4 (282-326)||(10981888-10981932)
[»] scaffold0002 (2 HSPs)
scaffold0002 (136-403)||(379600-379859)
scaffold0002 (287-393)||(120969-121075)
[»] chr2 (23 HSPs)
chr2 (136-399)||(15390537-15390792)
chr2 (284-400)||(15825178-15825294)
chr2 (191-397)||(3586302-3586500)
chr2 (196-401)||(29710962-29711157)
chr2 (284-381)||(18135895-18135992)
chr2 (140-376)||(10923140-10923368)
chr2 (284-379)||(19050407-19050502)
chr2 (284-382)||(24157275-24157373)
chr2 (325-403)||(24318977-24319055)
chr2 (308-401)||(18772296-18772389)
chr2 (284-380)||(24499813-24499909)
chr2 (146-401)||(29137795-29138043)
chr2 (284-377)||(36267522-36267615)
chr2 (285-383)||(12168998-12169096)
chr2 (338-401)||(19290545-19290608)
chr2 (294-381)||(19919036-19919123)
chr2 (284-380)||(23257806-23257901)
chr2 (284-402)||(20120371-20120489)
chr2 (284-378)||(45258125-45258219)
chr2 (285-358)||(27846512-27846585)
chr2 (284-339)||(18770338-18770393)
chr2 (218-376)||(45714961-45715111)
chr2 (292-358)||(18134350-18134418)
[»] scaffold0294 (1 HSPs)
scaffold0294 (284-401)||(192-310)
[»] scaffold0380 (1 HSPs)
scaffold0380 (191-401)||(6810-7012)
[»] chr8 (26 HSPs)
chr8 (196-397)||(24576537-24576730)
chr8 (295-401)||(11776193-11776299)
chr8 (311-402)||(23243835-23243926)
chr8 (284-401)||(21416762-21416879)
chr8 (317-384)||(4565360-4565427)
chr8 (319-401)||(20055623-20055704)
chr8 (284-403)||(3459433-3459551)
chr8 (286-400)||(17698236-17698350)
chr8 (282-372)||(6928069-6928159)
chr8 (285-378)||(24507482-24507575)
chr8 (284-380)||(30477665-30477761)
chr8 (284-383)||(26916866-26916965)
chr8 (284-379)||(13754782-13754877)
chr8 (346-401)||(16214713-16214768)
chr8 (284-379)||(18322967-18323062)
chr8 (146-275)||(20055473-20055603)
chr8 (325-381)||(14666810-14666866)
chr8 (284-403)||(5859839-5859958)
chr8 (285-338)||(13765014-13765067)
chr8 (149-279)||(11776298-11776429)
chr8 (233-283)||(14666898-14666949)
chr8 (349-397)||(17319588-17319634)
chr8 (342-382)||(23269316-23269356)
chr8 (321-381)||(23497133-23497193)
chr8 (282-338)||(24070874-24070930)
chr8 (284-348)||(24677590-24677654)
[»] scaffold0103 (1 HSPs)
scaffold0103 (284-401)||(40820-40937)
[»] scaffold0092 (1 HSPs)
scaffold0092 (138-403)||(21566-21823)
[»] scaffold0005 (1 HSPs)
scaffold0005 (284-377)||(215296-215389)
[»] scaffold0479 (1 HSPs)
scaffold0479 (146-400)||(4934-5178)
[»] scaffold0096 (1 HSPs)
scaffold0096 (321-403)||(42309-42391)
[»] scaffold0140 (1 HSPs)
scaffold0140 (284-401)||(6322-6439)
[»] scaffold0518 (1 HSPs)
scaffold0518 (315-402)||(9029-9116)
[»] scaffold0013 (1 HSPs)
scaffold0013 (284-379)||(4396-4491)
[»] scaffold0464 (1 HSPs)
scaffold0464 (146-376)||(11410-11628)
[»] scaffold0263 (1 HSPs)
scaffold0263 (284-401)||(20447-20564)
[»] scaffold0291 (1 HSPs)
scaffold0291 (292-398)||(15383-15489)
[»] scaffold0360 (1 HSPs)
scaffold0360 (284-378)||(13946-14040)
[»] scaffold0023 (1 HSPs)
scaffold0023 (284-379)||(95782-95877)
[»] scaffold0074 (2 HSPs)
scaffold0074 (325-402)||(53222-53299)
scaffold0074 (282-334)||(35275-35327)
[»] scaffold0054 (1 HSPs)
scaffold0054 (284-379)||(68774-68867)
[»] scaffold0057 (1 HSPs)
scaffold0057 (292-401)||(73752-73861)
[»] scaffold0505 (1 HSPs)
scaffold0505 (292-338)||(7917-7963)
[»] scaffold0022 (1 HSPs)
scaffold0022 (234-283)||(69283-69333)


Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 19277405 - 19277024
Alignment:
Q  20 cacggttatacatatgatgaaggaatcctttttgataacattaatgatgaatcaaggtaagaaaataggaatccttaatacatactattggaacttgtgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19277405 cacggttatacatatgatgaaggaatcctttttgataacattaatgatgaatcaaggtaagaaaataggaatccttaatacatactattggaacttgtgc 19277306  T
Q  120 tcaaatatttgttaataatgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcgg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19277305 tcaaatatttgttaataatgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggtacggcgg 19277206  T
Q  220 cgatgagtctttccggtggaacaaaaggtgcctgcaggcagctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaa 319  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  19277205 cgatgagtctttccggtggaacaaaaggtgcctgcagacagctagaactccgacgctcaagtcgctc--gtgagtaatggaaatgagaaagagtgtgtaa 19277108  T
Q  320 gaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19277107 gaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 19277024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 34064220 - 34064334
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    |||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34064220 tcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgag 34064319  T
Q  385 ttggtcataaccgtc 399  Q
    |||| ||||||||||    
T  34064320 ttggccataaccgtc 34064334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 138 - 398
Target Start/End: Complemental strand, 19730795 - 19730544
Alignment:
Q  138 tgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtg 237  Q
    ||||||| ||||| |||| | |||||| |||||||| || ||||||||| || |||| ||||||||  || ||||||| ||||| ||||||||   ||||    
T  19730795 tgatctgtccggtaagaaaggttgagtggcaacggctgcagagaatgctccggtgtggcggtaacgactttcggcacgacggcgttgagtcttcgtggtg 19730696  T
Q  238 gaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagt 336  Q
    |||  |||| ||| |||||||| | ||| ||||| |||||||||||| |         ||||||| |||||||||||||||||||||||| ||| |||||    
T  19730695 gaagtaaag-tgcatgcaggcatgttagcactccaacgctcaagtcaat---------aatggaactgagaaagagtgtgtaagaagtgtcgtgtaaagt 19730606  T
Q  337 gatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgt 398  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||    
T  19730605 gatgtgtaccttgagggtgaagcaagttcacccttatataggtgcgcattggctataaccgt 19730544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 284 - 395
Target Start/End: Original strand, 9403196 - 9403307
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9403196 ctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggtgcgc 9403295  T
Q  384 tttggtcataac 395  Q
     |||| ||||||    
T  9403296 gttggccataac 9403307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 159 - 401
Target Start/End: Complemental strand, 12449767 - 12449533
Alignment:
Q  159 ttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggc 258  Q
    ||||||||||||| |||  |||||||||  | |||||| ||||||  || |||||| |||| ||||||||||   ||||| || ||||||| ||| ||||    
T  12449767 ttgagtagcaacgacggtagagaatgctctggtgtgacagtaacgactttcggcaccgcggtgatgagtcttcgtggtgggacgaaaggtgtctgtaggc 12449668  T
Q  259 a-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaa 357  Q
    | | ||| |||| |||||||||||||         ||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12449667 acgttagcactctgacgctcaagtca---------gtaatggagctgaaaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaa 12449577  T
Q  358 gcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
     |||||| |||||||||||||||||| ||||||||||| |||||    
T  12449576 tcaagtttacccttatataggcgcgcgttggtcataactgtctc 12449533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 401
Target Start/End: Complemental strand, 27861017 - 27860898
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||||||| |||||||||| ||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  27861017 cactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatgtgtactttgagggtgaagcaagttcacccttttataggcgc 27860918  T
Q  382 gctttggtcataaccgtctc 401  Q
    |  |||| ||||||||||||    
T  27860917 gtgttggccataaccgtctc 27860898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 31295602 - 31295486
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||||| || |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |     
T  31295602 ctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtgatatgtacctcgagggtgaagcaagttcacccttacataggcgggg 31295503  T
Q  384 tttggtcataaccgtct 400  Q
     |||| |||||||||||    
T  31295502 gttggccataaccgtct 31295486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 377
Target Start/End: Complemental strand, 22497492 - 22497272
Alignment:
Q  148 ggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaagg 247  Q
    |||||||| | |||||| ||||||| ||| ||||||||| ||||| | |||||| || |||||   |||||||||||||||||  || |||||| |||||    
T  22497492 ggtgagaacgattgagtcgcaacggtggcagagaatgctccgatg-gtcggtaatggcttccgatgcggcggcgatgagtcttcgcgatggaacgaaagg 22497394  T
Q  248 tgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtacc 346  Q
    ||| ||||| || | ||| ||||||||||||||||||         |||||||||  || | |||| || ||| ||||||||||||||||| ||||||||    
T  22497393 tgcttgcagacacgttagcactccgacgctcaagtca---------gtaatggaacagaaagagagagtataaaaagtgttgtgaaaagtgttgtgtacc 22497303  T
Q  347 ttgagggtgaagcaagttcacccttatatag 377  Q
    ||||||||||||||||||||||| |||||||    
T  22497302 ttgagggtgaagcaagttcacccatatatag 22497272  T

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Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 401
Target Start/End: Complemental strand, 12424380 - 12424264
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    |||||| |||||||||| ||||| |||  || ||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  12424380 tcaagtcagtaatggaactgagagagaaagtctaaaaagtgttgtgaaaagtgttgtgtaccttaagggtgaagcaagttcacccttatataggcgcgct 12424281  T
Q  385 ttggtcataaccgtctc 401  Q
       | ||||||||||||    
T  12424280 cgtgacataaccgtctc 12424264  T

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Target: chr6; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 282 - 401
Target Start/End: Original strand, 16343601 - 16343720
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||||||| |||||||||| ||||| |||  ||||||||||||||||| |||||||||||||| ||||  ||||||||||||||| ||||||||||| |    
T  16343601 cactcaagtcagtaatggaactgagagagaaagtgtaagaagtgttgtggaaagtgatgtgtactttgaatgtgaagcaagttcacacttatataggcac 16343700  T
Q  382 gctttggtcataaccgtctc 401  Q
    || |||  ||||||||||||    
T  16343701 gcgttgagcataaccgtctc 16343720  T

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Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 19305488 - 19305586
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||||||| |||| |||||||||||  ||||||||||||||||||    |||||||||||||||||||| ||||||||| |||||||||    
T  19305488 ctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaaggtcacccttaaataggcgcg 19305586  T

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Target: chr6; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 12488038 - 12487970
Alignment:
Q  309 agagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  12488038 agagtgtgtaagtagtgttgtgaaaagtgatgtgtacattgagggtgatacaagttcacccttatatag 12487970  T

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Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 402
Target Start/End: Original strand, 18566689 - 18566799
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    |||||||||| ||||||||| ||||||  ||| ||||| |||||||| || |||||||||||||| |||||||||||  ||||||||||||  |||||||    
T  18566689 agtaatggaactgagaaagattgtgtagaaagcgttgtaaaaagtgaagtctaccttgagggtgaggcaagttcacctctatataggcgcgggttggtca 18566788  T
Q  392 taaccgtctct 402  Q
    ||  |||||||    
T  18566789 tactcgtctct 18566799  T

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Target: chr6; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 374
Target Start/End: Original strand, 23768217 - 23768307
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttata 374  Q
    ||||||| |||||| ||| ||| | | |||||||||||||||||||| ||||||||||||||||  ||||| |||||||||||||||||||    
T  23768217 ctcaagtcagtaattgaactgaaagatagtgtgtaagaagtgttgtggaaagtgatgtgtacctcaagggtaaagcaagttcacccttata 23768307  T

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Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 689924 - 689808
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| |||||||| |||||||  ||||||||||||||||||   ||||||||||| || | |||| |||||||||||||||||| |    
T  689924 ctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaatcgtaccttgaggctg-atcaaggtcacccttatataggcgcac 689826  T
Q  384 tttggtcataaccgtctc 401  Q
     ||| |||||| ||||||    
T  689825 gttgatcataatcgtctc 689808  T

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Target: chr6; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 18994044 - 18994120
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  18994044 gttgttaaaagtgttgtgtaccctgaggttgaagcaagttcacccttatataggcgcgcttgtggcataaccgtctc 18994120  T

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Target: chr6; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 34187321 - 34187413
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||| ||| |||||||  |||||||||||||||||||    ||||||||||||||||    
T  34187321 cactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtg-aaagtgaattgtaccttgagggtgaagc----tcacccttatataggc 34187413  T

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Target: chr6; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 13823410 - 13823330
Alignment:
Q  319 agaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||  | ||||||||||||    
T  13823410 agaattgttgtaaaaagtgttgtgtaccttgagggtgaagcaagttcacctttatataggcgcactt--ggcataaccgtctc 13823330  T

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Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 388
Target Start/End: Original strand, 18147330 - 18147434
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| | ||||||||  |||||||||||||||  ||||||||||||||||||    |||||| ||||||||||||  ||||||||||||||| ||||    
T  18147330 ctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgactcatacctttagggtgaagcaatgtcacccttatataggtgcgc 18147429  T
Q  384 tttgg 388  Q
     ||||    
T  18147430 attgg 18147434  T

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Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 20148341 - 20148434
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| |||||||||| |||||||||||||  ||  |||||||||||||||||    |||||||| ||||||||||| ||||||||||||||||    
T  20148341 ctcaagttagtaatggaattgagaaagagtgtagaa--agtgttgtgaaaagtgaatcataccttgatggtgaagcaaggtcacccttatataggc 20148434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 22184487 - 22184394
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| |||||||||| |||||||||||||  ||  |||||||||||||||||    |||||||| ||||||||||| ||||||||||||||||    
T  22184487 ctcaagttagtaatggaattgagaaagagtgtagaa--agtgttgtgaaaagtgaatcataccttgatggtgaagcaaggtcacccttatataggc 22184394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 14184574 - 14184523
Alignment:
Q  333 aagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  14184574 aagtgttgtgtaccttgagggtgaagcaagttcacccttatataggtgcgct 14184523  T

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Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 14921298 - 14921212
Alignment:
Q  314 gtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtct 400  Q
    |||||||||||| ||||||||||| ||||| | | ||||||||||||||||||| |||||||||||| |||   | |||||||||||    
T  14921298 gtgtaagaagtgatgtgaaaagtgttgtgtccttggagggtgaagcaagttcacacttatataggcgtgctcatggcataaccgtct 14921212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 383
Target Start/End: Original strand, 16130993 - 16131091
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    |||||| |||||||||| ||| |||||||||  |  ||||||||||||| ||||    ||||||||||||||| |||||| ||||||||||||||||||    
T  16130993 tcaagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaatcataccttgagggtgaaacaagtttacccttatataggcgcgc 16131091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 19294819 - 19294757
Alignment:
Q  37 tgaaggaatcctttttgataacattaatgatgaatcaaggtaagaaaataggaatccttaata 99  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| | ||||||||||||||    
T  19294819 tgaaggaatcctttttgaaaaaattaatgatgagtcaaggtaagaacacaggaatccttaata 19294757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 401
Target Start/End: Original strand, 22572077 - 22572185
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    |||||||||| ||| ||||||||||||  | |||||||| |||||||    || ||||||||||||||||||||||| |||||| ||||||| |||  ||    
T  22572077 agtaatggaattga-aaagagtgtgtagaaggtgttgtgtaaagtgaatcatatcttgagggtgaagcaagttcacctttatattggcgcgcgttgagca 22572175  T
Q  392 taaccgtctc 401  Q
    ||||||||||    
T  22572176 taaccgtctc 22572185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 3404931 - 3404831
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    |||| |||| |||||||||| ||||||||||||||||  |||||||||||||| |||    ||||||||||||||||  |  | ||||||||||||||||    
T  3404931 cacttaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcataccttgagggtgaagttaaattacccttatataggcgc 3404832  T
Q  382 g 382  Q
    |    
T  3404831 g 3404831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 17380123 - 17380239
Alignment:
Q  286 caagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctt 385  Q
    ||||| |||||| ||| |||||||||||||| |  ||||||||||||||||||    |||||| ||| ||| ||||| ||||||||||||||||| || |    
T  17380123 caagtcagtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtgaatcttaccttcaggttgacgcaaggtcacccttatataggcgtgcgt 17380222  T
Q  386 tggtcataaccgtctct 402  Q
    |||  ||||||| ||||    
T  17380223 tgggaataaccgcctct 17380239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 33596893 - 33596988
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttg 387  Q
    ||||||| || | ||||| ||||||||  ||||||||||||||  ||    |||||||||| |||||||||||||| |||||||||||||||||||    
T  33596893 agtaatgaaactaagaaaaagtgtgtagaaagtgttgtgaaaatggaatcataccttgaggatgaagcaagttcactcttatataggcgcgctttg 33596988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 11087529 - 11087643
Alignment:
Q  287 aagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcttt 386  Q
    |||| ||||||| || ||||||||||| ||||    ||||||||||||||||    |||||||||| |||| |||||||||||||||||||| |||| ||    
T  11087529 aagtcagtaatgtaactgagaaagagtatgtagattgtgttgtgaaaagtgaatcataccttgaggatgaaacaagttcacccttatataggtgcgcgtt 11087628  T
Q  387 ggtcataaccgtctc 401  Q
    |  |||||| |||||    
T  11087629 gagcataactgtctc 11087643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 31423894 - 31423806
Alignment:
Q  294 taatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||| || ||||||||||| ||||  ||||||||||| ||||||    |  |||||||||||||||||| ||||||||||||||||||    
T  31423894 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaatcatgtcttgagggtgaagcaagtgcacccttatataggcgcg 31423806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 15480408 - 15480314
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||| | ||||| || ||||||| ||||||||  ||||||||||||||||||    ||||||||| ||||||| |  |||||||||||||||    
T  15480408 ctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagagtgaagctaagtcacccttatatagg 15480314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 9403063 - 9403153
Alignment:
Q  138 tgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtc 228  Q
    ||||||| | || ||||||| |||||||||||||||||    ||||||| || |||||||||||||| ||| | || ||| ||||||||||    
T  9403063 tgatctgtctggcgagaatggttgagtagcaacggcggtaaggaatgctccggtgtgacggtaacggcttctgacatggcagcgatgagtc 9403153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 14080508 - 14080561
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 338  Q
    ||||||| ||||||| || ||||||||||||||||  ||||||||||||||||||    
T  14080508 ctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtga 14080561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 25008457 - 25008415
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgt 326  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||    
T  25008457 ctcaagtcagtaatggaattgagaaagagtgtgtaaaaagtgt 25008415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 34573061 - 34572963
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||| ||| | ||||| ||||||||  |||||| |||||||||||    ||| ||||||||||||  |  |||||||||||||||||||    
T  34573061 ctcaagttagtaatagaactaagaaaaagtgtgtagaaagtgtggtgaaaagtgaatcatacattgagggtgaagttaagtcacccttatataggcgcg 34572963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 9292086 - 9291990
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||||| |||| ||||| ||||||| ||| ||||| |||||| | |||||||||    ||||||||||||||||| |  ||||| ||||||||||||    
T  9292086 ctcaagtcagtattggaactgagaaatagtatgtaaaaagtgtgg-gaaaagtgaatcataccttgagggtgaagctaactcacctttatataggcgc 9291990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 377
Target Start/End: Complemental strand, 10115752 - 10115659
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    ||||||| ||||||| || |||||||||| | |||| |||| |||||||||||||    ||||| ||||||||||| |  ||| ||||||||||    
T  10115752 ctcaagtcagtaatgaaactgagaaagagcgagtaaaaagttttgtgaaaagtgaatcatacctcgagggtgaagctaagtcagccttatatag 10115659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 4251110 - 4251034
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaa 361  Q
    |||||| ||||||| ||||||||||||||||| |   ||||||||||||||| |    || ||||||||||||||||    
T  4251110 tcaagtcagtaatgaaaatgagaaagagtgtggagagagtgttgtgaaaagtaaatcatatcttgagggtgaagcaa 4251034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 27772573 - 27772537
Alignment:
Q  343 taccttgagggtgaagcaagttcacccttatataggc 379  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  27772573 taccttgaaggtgaagcaaggtcacccttatataggc 27772537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 167 - 401
Target Start/End: Complemental strand, 13292299 - 13292073
Alignment:
Q  167 caacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctaga 265  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||   |||||||  ||||||| ||||||| | | |||     
T  13292299 caacggcggcagagaatgctccgatgtgacggtaacagtttccggcacggcggcgatgagtcttcgtggtggaaggaaaggtgtctgcaggtacgttagc 13292200  T
Q  266 actccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttc 365  Q
    ||||  ||||||||||||         |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13292199 actctaacgctcaagtca---------gtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttc 13292109  T
Q  366 acccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||| |||||||||||||| |||| ||||||||||||    
T  13292108 accattatataggcgcgcgttggccataaccgtctc 13292073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 139 - 401
Target Start/End: Complemental strand, 16987296 - 16987042
Alignment:
Q  139 gatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtgg 238  Q
    |||||| |||||||||| | |||| | | ||||  ||| ||||||||| || ||||||| |||||| ||| || |||||||| |||||||||  ||||||    
T  16987296 gatctgtccggtgagaacggttgaatggtaacgagggcagagaatgctccggtgtgacgctaacggcttctggtacggcggcaatgagtcttcgcggtgg 16987197  T
Q  239 aacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtg 337  Q
    ||| |||||||| ||| |||| | ||| |||| ||| |||||| ||         ||||||||| |||||||||||||||||||||||||||||||||||    
T  16987196 aacgaaaggtgcatgcgggcacgttagcactctgacactcaagcca---------gtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtg 16987106  T
Q  338 atgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||||| |||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  16987105 atgtgtcccttaaaggtgaagcaagttcacccttatataggcgcgcgttggccataaccgtctc 16987042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 34854267 - 34854379
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| | |    
T  34854267 ctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtgatgtgtactctgagggtgaaacaagttcacccttatataggccctc 34854366  T
Q  384 tttggtcataacc 396  Q
     ||||||||||||    
T  34854367 gttggtcataacc 34854379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 401
Target Start/End: Complemental strand, 9135523 - 9135311
Alignment:
Q  181 aatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaa 279  Q
    ||||||||| ||||||||||||||||||| | ||||||| | | ||||||  ||||||||| |||||||| |  ||||| | ||| ||||  ||||||||    
T  9135523 aatgcttcggtgtgacggtaacggtttccagtacggcggtgttaagtcttcacggtggaacgaaaggtgcatataggcacgttagcactctaacgctcaa 9135424  T
Q  280 gtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||         ||||||||| ||||||||||||||||| || |||||||||||||||    ||||||||||||||||||| ||||||||||||||| |    
T  9135423 gtca---------gtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaatcataccttgagggtgaagcaaattcacccttatatagac 9135333  T
Q  380 gcgctttggtcataaccgtctc 401  Q
     ||  |||||||||||||||||    
T  9135332 acgtattggtcataaccgtctc 9135311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 400
Target Start/End: Original strand, 12644753 - 12644926
Alignment:
Q  220 cgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgta 318  Q
    |||||||||||  ||||||||| |||||||| |||||||| | ||| ||||||||||||| ||||         ||||||||| ||||||| |||||||     
T  12644753 cgatgagtcttcacggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtca---------gtaatggaactgagaaaaagtgtgtg 12644843  T
Q  319 agaagtgttg-tgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtct 400  Q
      |||||||| ||||||||||  ||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  12644844 gaaagtgttggtgaaaagtgaattgtacgttgagggtgaagcaagttcacccttgtagaggcgcgcgttggtcataaccgtct 12644926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 285 - 401
Target Start/End: Complemental strand, 5925541 - 5925425
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    |||||| |||||||||| ||||| |||  || |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  5925541 tcaagtcagtaatggaactgagagagaaagtctaagaagtgtcgtgaaaagtgttgtgttccttgagggtgaagcaagttcacccttatgtaggcgcgct 5925442  T
Q  385 ttggtcataaccgtctc 401  Q
       | ||||||||||||    
T  5925441 cgtggcataaccgtctc 5925425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 5929080 - 5928991
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcaccctt 371  Q
    ||||||||| |||||||||| ||| | |||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  5929080 cactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatgtgtcccttgggggtgaagcaaattcaccctt 5928991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 10287663 - 10287562
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||||||||||||||    ||||||||||||| | |||||| ||||||||||||||||||    
T  10287663 ctcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaagtgagagataccttgagggtgtaacaagtttacccttatataggcgcgc 10287564  T
Q  384 tt 385  Q
    ||    
T  10287563 tt 10287562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 283
Target Start/End: Complemental strand, 9868144 - 9867998
Alignment:
Q  138 tgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtg 237  Q
    ||||||| ||||||||||||  ||||| |||||| || | || |||||||||||||||||||||||| |||| | |||||||||| |||||||  |||||    
T  9868144 tgatctgtccggtgagaatgaatgagtggcaacgacgacagataatgcttcgatgtgacggtaacggcttccagaacggcggcgacgagtcttcgcggtg 9868045  T
Q  238 gaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtca 283  Q
    | || |||||||| |||||| | | ||| |||| |||||||||||||    
T  9868044 ggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtca 9867998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 12265155 - 12265092
Alignment:
Q  321 aagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  12265155 aagtgttgtgaaaagtgatgcgtaccttgagggtcaagcaagttcacccttatataggcacgct 12265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 401
Target Start/End: Original strand, 18774013 - 18774122
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    |||||||||| ||||| |||  ||  ||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||| || ||| | | ||    
T  18774013 agtaatggaactgagagagaaagtcaaagaagtgtagtgaaaagtgttgtgtaccttgagggtgaaacaaattcacccttatatagacgtgctcttggca 18774112  T
Q  392 taaccgtctc 401  Q
    ||||||||||    
T  18774113 taaccgtctc 18774122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 4781526 - 4781470
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4781526 gttgtgtaaagtgttgtgtaccttgagggtgaagcaagttcacccttatataggcgc 4781470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 4813957 - 4813901
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4813957 gttgtgtaaagtgttgtgtaccttgagggtgaagcaagttcacccttatataggcgc 4813901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 20034374 - 20034456
Alignment:
Q  319 agaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||||| |||| | | ||| ||||||||    
T  20034374 agaagtgtagtgaaaagtgttgtgtaccttgagggtaaagcaagtacacccttatataggcccgctcttggcatgaccgtctc 20034456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 400
Target Start/End: Original strand, 1979086 - 1979202
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||||| |||  || |||||||||||||||| |||| ||||||  ||| | |||||||||||||||| |||||||||| |||    
T  1979086 ctcaagtcagtaatggaactgagagagaaagtctaagaagtgttgtgaagagtgttgtgtatattgggagtgaagcaagttcacctttatataggcacgc 1979185  T
Q  384 tttggtcataaccgtct 400  Q
    |   | |||||||||||    
T  1979186 tcgtggcataaccgtct 1979202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 397
Target Start/End: Original strand, 5863211 - 5863324
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||| ||| ||||||||||||||||  || |||||| ||||||||    ||||||||||||| |||||  |||||||| |||||||||||    
T  5863211 ctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttgtaaaaagtgaatcataccttgagggtggagcaatgtcacccttgtataggcgcgc 5863310  T
Q  384 tttggtcataaccg 397  Q
     ||||  |||||||    
T  5863311 gttggaaataaccg 5863324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 26762978 - 26762880
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| ||||| |||| | | ||| ||||||||  ||||||||||||||||||    ||||||||||||||||||||  ||||| ||||||||||||    
T  26762978 ctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaaggacacccatatataggcgcg 26762880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 12265287 - 12265176
Alignment:
Q  148 ggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctt-tccggtggaacaaaag 246  Q
    |||||||| | |||||| |||| |||||| ||||||||| |||||   ||||||||| ||||||  ||||| |||||| |||| | ||||||||||||||    
T  12265287 ggtgagaacggttgagtcgcaatggcggcagagaatgctccgatgat-cggtaacggcttccggtgcggcgacgatgactcttctacggtggaacaaaag 12265189  T
Q  247 gtgcctgcaggca 259  Q
    |||| ||||||||    
T  12265188 gtgcatgcaggca 12265176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 29373489 - 29373569
Alignment:
Q  303 tgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||||||||||||  || ||||||||||| |||    |||||||||||||||||||  ||||||| ||||||||||||    
T  29373489 tgagaaagagtgtgtagaaaatgttgtgaaaattgaatcataccttgagggtgaagcaatgtcaccctcatataggcgcgc 29373569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 43172065 - 43172005
Alignment:
Q  322 agtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    |||||||||||||||||    ||| ||||||||||||||| ||||||||||||||||||||    
T  43172065 agtgttgtgaaaagtgaatcatacattgagggtgaagcaacttcacccttatataggcgcg 43172005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 17150026 - 17150101
Alignment:
Q  326 ttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||||||| || || ||| ||||||||||||||||||| |||| |||||||||| ||||| | | ||||||||||    
T  17150026 ttgtgaaaattgttgcgtagcttgagggtgaagcaagttaacccctatataggcgtgcttttggcttaaccgtctc 17150101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 39879411 - 39879465
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 338  Q
    ||||||| ||||||| || ||||||||||||||||| ||||||||| ||||||||    
T  39879411 ctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtga 39879465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 16204340 - 16204409
Alignment:
Q  309 agagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||||||  ||||||||||||||||||    |||||| ||||||||| || ||||||||||||||||    
T  16204340 agagtgtgtataaagtgttgtgaaaagtgaaccataccttaagggtgaagaaaattcacccttatatagg 16204409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 7486577 - 7486659
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttata 374  Q
    |||||||||| ||||||||| ||||||  | ||||||||||||||||    | |||| | ||||||| |||||||||||||||    
T  7486577 agtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtgaatcatcccttaaaggtgaagaaagttcacccttata 7486659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 16203768 - 16203840
Alignment:
Q  306 gaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    |||||||||||||  ||||||| ||||||||||    |||||| ||||||||| ||  |||||||||||||||    
T  16203768 gaaagagtgtgtataaagtgttatgaaaagtgaaccataccttaagggtgaagaaaagtcacccttatatagg 16203840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 146 - 400
Target Start/End: Complemental strand, 11112 - 10866
Alignment:
Q  146 ccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaa 245  Q
    |||||||||| | |||||| ||||||| |||  |||||||| ||||| | ||||||||  |||||| ||||||||||||| ||| | |||||||||||||    
T  11112 ccggtgagaacggttgagtcgcaacggtggcaaagaatgctccgatgagtcggtaacgacttccggtacggcggcgatgaatctctgcggtggaacaaaa 11013  T
Q  246 ggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgta 344  Q
    ||||  |||||||| | ||| ||||| |||||||||||| |         ||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  11012 ggtgtatgcaggcacgttagcactccaacgctcaagtcaat---------aatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtgatgtgta 10922  T
Q  345 ccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtct 400  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||| ||||||||||||    
T  10921 ccttgagggtgaaacaagttcacctttatatagacgcgcattgatcataaccgtct 10866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 22910 - 23027
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  22910 ctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtgacgtgtaccttgagggtgaagcaagttcacccttatgtaggtgcgc 23009  T
Q  384 tttggtcataaccgtctc 401  Q
     ||||| |||||| ||||    
T  23010 gttggtgataaccctctc 23027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 166 - 401
Target Start/End: Original strand, 25537319 - 25537546
Alignment:
Q  166 gcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctag 264  Q
    ||||||||||  |||||||||  | |||||||||||||||||| ||||||||||||| |||||||  ||||||||| ||||||||||||| ||| | |||    
T  25537319 gcaacggcggaagagaatgctctggtgtgacggtaacggtttctggcacggcggcgaagagtcttcgcggtggaacgaaaggtgcctgcaagcacgttag 25537418  T
Q  265 aactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagtt 364  Q
     ||||| |||||||||       | ||  |||||||| ||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  25537419 cactccaacgctcaag-------attg--taatggaactgagaaagattgtgtatgaagtgttgtgaaaagtgatgtataccttgagggtgaagaaagtt 25537509  T
Q  365 cacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||||||||||||||||| |||| || |||||||||    
T  25537510 cacccttatataggcgcgccttggccaaaaccgtctc 25537546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 159 - 398
Target Start/End: Original strand, 22865668 - 22865899
Alignment:
Q  159 ttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggc 258  Q
    |||||||||||||||||| ||||||||| || |||||||||||||| || |||||||| |||||   |||||  | ||||||| |||||||| ||||||     
T  22865668 ttgagtagcaacggcggcagagaatgctccggtgtgacggtaacggctttcggcacggtggcgacatgtcttcgcagtggaacgaaaggtgcatgcaggt 22865767  T
Q  259 a-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaa 357  Q
    | | ||| |||  ||||||||||| |         ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  22865768 acgttagcactttgacgctcaagtta---------gtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtgatgtgtaccttgagggtgaa 22865858  T
Q  358 gcaagttcacccttatataggcgcgctttggtcataaccgt 398  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  22865859 gcaagttcacccttatataggcgtgcgttggccataaccgt 22865899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 292 - 394
Target Start/End: Original strand, 24647320 - 24647422
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||    
T  24647320 agtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtataccttaagggtgaagcaagttcacccttatataggcgcgcttggatca 24647419  T
Q  392 taa 394  Q
    |||    
T  24647420 taa 24647422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 402
Target Start/End: Complemental strand, 31202407 - 31202324
Alignment:
Q  320 gaagtgttgtgaaaagtgatg-tgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctct 402  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  31202407 gaagtgttgtggaaagtgataatgtaccttgagggtgaagcaagttcacccttatataggcgcacgttggtcataaccgtctct 31202324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 294 - 376
Target Start/End: Complemental strand, 25829045 - 25828963
Alignment:
Q  294 taatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  25829045 taatggaattgagaaaaagtgtgtaagaagtattgtgaaaagtgatgtgtcccttgagggtgaaacaagttcacccgtatata 25828963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 24546391 - 24546483
Alignment:
Q  309 agagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaa-gttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| || | ||||||||||||    
T  24546391 agagtgtataagaagtgttgtgaaa-gtgatgtgtaccttgaaggtgaagcaaagttcacccttatataggcgcgcgttagccataaccgtctc 24546483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 401
Target Start/End: Original strand, 21213306 - 21213384
Alignment:
Q  323 gtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct-ttggtcataaccgtctc 401  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  21213306 gtgtagtgaaaagtgttgtgtagcttgagggtgaagcaagttcacccttatataggcgcgctcttggt-ataaccgtctc 21213384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 383
Target Start/End: Complemental strand, 26994673 - 26994574
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||||||||||||| ||  | ||||||||||||||||    ||||||| |||||||||||| ||||||||||||||||||||    
T  26994673 ctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttgggggtgaagcaaggtcacccttatataggcgcgc 26994574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 18799844 - 18799922
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||   | ||||||||||||||    
T  18799844 gttgtgaaaagtgttgtgtaccttgatgatgaagcaagttcacccttatataggcgcgctcgaggcataaccgtctctg 18799922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 22903117 - 22903209
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
    ||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||    ||||||||||||||| |||  |||||||||||||    
T  22903117 ctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaaacaatatcacccttatata 22903209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 25679272 - 25679197
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtct 400  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||| | | |||||||||||    
T  25679272 gttgtgaaaagtgttgtctagcttgagggtgaagcaagttcacccttatataggtgcgctcttggcataaccgtct 25679197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 26348109 - 26348061
Alignment:
Q  333 aagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26348109 aagtgttgtgtaccttgagggtgaagcaagttcacccttatataggcgc 26348061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 25333759 - 25333876
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||||| || | ||| ||||||||||  ||||||||| ||||||||    ||| ||||| ||||||||||||||| |||||||| ||| ||    
T  25333759 ctcaagtcagtaatgtaactaagagagagtgtgtagaaagtgttgttaaaagtgaatcatactttgagagtgaagcaagttcactcttatataagcgtgc 25333858  T
Q  384 tttggtcataaccgtctc 401  Q
     ||| |||||||||||||    
T  25333859 attgctcataaccgtctc 25333876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 18803982 - 18804037
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcg 380  Q
    |||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||    
T  18803982 gttgtgaaaattgttgtgtaccttgagggtgaagcaatttcacccgtatataggcg 18804037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 31202612 - 31202487
Alignment:
Q  159 ttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggc 258  Q
    |||||| ||||||  ||| |||||||||  | |||||||||||||  ||| | |||||||||||||||||||  |||||||||| || |||||| ||||     
T  31202612 ttgagtggcaacgatggcagagaatgctctggtgtgacggtaacgacttctgacacggcggcgatgagtcttcgcggtggaacagaaagtgcctacagga 31202513  T
Q  259 a-gctagaactccgacgctcaagtca 283  Q
    | | ||| | ||||||||||||||||    
T  31202512 acgttagcattccgacgctcaagtca 31202487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 20025326 - 20025406
Alignment:
Q  303 tgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||||||||||||  |||||||||| |||||||    | ||||||||||||||| || ||||||||||| ||||||||    
T  20025326 tgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcattccttgagggtgaagctaggtcacccttatacaggcgcgc 20025406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 32418533 - 32418460
Alignment:
Q  304 gagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    |||||||||||||||   ||||||||||| |||||    |||||||||| |||||||||||||||||| |||||    
T  32418533 gagaaagagtgtgtagagagtgttgtgaagagtgaatcataccttgaggatgaagcaagttcacccttgtatag 32418460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 27083283 - 27083206
Alignment:
Q  306 gaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    |||||||||||||  ||||||||||||||||||    ||||||||||||||||  |  ||||||||  ||||||||||    
T  27083283 gaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagttaagtcacccttgcataggcgcgc 27083206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 128 - 376
Target Start/End: Complemental strand, 12731776 - 12731536
Alignment:
Q  128 ttgttaataatgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagt 227  Q
    ||||| ||| ||||| | |||||||||| | |||||||||||| ||||| ||||||| |||| ||||||||||| || ||||||||||||||||| ||||    
T  12731776 ttgtttatattgatcggtccggtgagaacggttgagtagcaacagcggcagagaatgtttcggtgtgacggtaaaggcttccggcacggcggcgaagagt 12731677  T
Q  228 ctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgt 326  Q
    |||   |||||||| || ||||||| ||  || | ||| ||||||||||||| |||| |         ||||||| ||||||||||||| ||||||||||    
T  12731676 cttcgaggtggaacgaatggtgcctacaaccatgttagtactccgacgctcacgtcatt---------aatggaactgagaaagagtgtataagaagtgt 12731586  T
Q  327 tgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12731585 tgtgaaaagtgatgtgaaccttgagggtgaagcaagttcacccttatata 12731536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 14860158 - 14860049
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  14860158 agtaatggaactgagaaacagtttgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcttaagtca 14860059  T
Q  392 taaccgtctc 401  Q
    ||||||||||    
T  14860058 taaccgtctc 14860049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 150 - 401
Target Start/End: Original strand, 12516083 - 12516326
Alignment:
Q  150 tgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtg 249  Q
    |||||| | |||||| ||||| ||||  |||||||||||| ||||| || ||||  |||| ||||| || |||| ||||||   |||| ||| |||||||    
T  12516083 tgagaacggttgagtggcaacagcggtagagaatgcttcggtgtgatggcaacgacttccagcacgacgacgatcagtcttcatggtgaaacgaaaggtg 12516182  T
Q  250 cctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtacctt 348  Q
    ||||||| || | ||| |||||||||||||||| |         ||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  12516183 cctgcagacacgttagcactccgacgctcaagtta---------gtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtgatatgtacctt 12516273  T
Q  349 gagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||||||||||||||||||| ||||||||| | || |||| ||||||||||||    
T  12516274 gagggtgaagcaagttcacctttatataggtgtgccttggccataaccgtctc 12516326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 159 - 401
Target Start/End: Original strand, 25495846 - 25496079
Alignment:
Q  159 ttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggc 258  Q
    |||||| ||||||||| | ||||||| | || |||||||||||||| |||||||||| ||| ||||| ||||  ||||||  |  ||||||||||||| |    
T  25495846 ttgagtggcaacggcgacagagaatgttccggtgtgacggtaacggcttccggcacgacggtgatgattcttcgcggtggggcgtaaggtgcctgcagac 25495945  T
Q  259 a-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaa 357  Q
    | | ||| |||| |||          ||||||| ||||||  || ||||||||||||||||||||| ||||  |||||||||||||||||| | ||||||    
T  25495946 acgttagcactctgac----------ctcaagtcagtaatcaaactgagaaagagtgtgtaagaagagttgaaaaaagtgatgtgtaccttaaaggtgaa 25496035  T
Q  358 gcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||||||||||||||||||||||| | ||| |||||||||||||    
T  25496036 gcaagttcacccttatataggcgcacgttgatcataaccgtctc 25496079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 287 - 397
Target Start/End: Original strand, 16704429 - 16704539
Alignment:
Q  287 aagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcttt 386  Q
    |||| |||||||||  |||||||||| |||||  ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| ||    
T  16704429 aagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcgcgcgtt 16704528  T
Q  387 ggtcataaccg 397  Q
    ||| |||||||    
T  16704529 ggtgataaccg 16704539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 30606952 - 30607051
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| |||||||||||| |||  ||||||||||||||||||  | |||||||||||||||| |||  |||||||||||||||||||    
T  30606952 ctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaattataccttgagggtgaagtaaggccacccttatataggcgcgc 30607051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 1770849 - 1770967
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgat-gtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||||||| |||| |||||||||||  |||||||||||||||||||  ||  |||||||| |||||||||||| |||||||||||| |||    
T  1770849 ctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtgatcatgcgccttgaggatgaagcaagttcgcccttatataggtgcg 1770948  T
Q  383 ctttggtcataaccgtctc 401  Q
    | |||  ||||||||||||    
T  1770949 cgttgtgcataaccgtctc 1770967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 20119002 - 20118926
Alignment:
Q  326 ttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctct 402  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  20119002 ttgtggaaagtattgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcttatggcataaccgtctct 20118926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 20122816 - 20122729
Alignment:
Q  314 gtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||| ||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||||||    
T  20122816 gtgtatgaagttttgtggaaagtgttgtgtaccttgagggtgaagaaagttcacccttatataggcgcgcttatggaataaccgtctc 20122729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 9801153 - 9801056
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||||| |||||| |||  |||||||||||||||  ||||||||||||||||||    |||||||||||||||||||  ||||||||||||||||    
T  9801153 cactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaatgtcacccttatataggc 9801056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 431383 - 431267
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| | |||||||| |||||||||||| ||   ||||| ||||||||||||  ||| |||||||||||||||| || ||||||||||||||||||     
T  431383 ctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtgaaaagtgaattgtcccttgagggtgaagcatgtccacccttatataggcgcgt 431284  T
Q  384 tttggtcataaccgtct 400  Q
     ||| ||||||| ||||    
T  431283 gttgctcataactgtct 431267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 395
Target Start/End: Original strand, 12108443 - 12108554
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatg-tgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||||||| ||||||||| |||| || || |||| || ||| |||   ||||||||||||||||||||||||||||||||||||||| ||    
T  12108443 ctcaagttagtaatggaactgagaaagaatgtgaaataa-tgttctggaaaatgagaatgtaccttgagggtgaagcaagttcacccttatataggcacg 12108541  T
Q  383 ctttggtcataac 395  Q
    | |||||||||||    
T  12108542 cgttggtcataac 12108554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 12252010 - 12252071
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 343  Q
    ||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  12252010 cactcaagtcagtaacgaaaatgagaaagagtgtgtaagaattgttgtgaaaagtgatgtgt 12252071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 17143816 - 17143724
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
    ||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||    ||||||| ||||||| |||  |||||||||||||    
T  17143816 ctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgggggtgaaacaacatcacccttatata 17143724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 28715547 - 28715465
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttata 374  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||    ||||||||||||||| |||  |||||||||||    
T  28715547 agtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaatcataccttgagggtgaaacaatatcacccttata 28715465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 9781575 - 9781514
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 343  Q
    ||||||| | ||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  9781575 cactcaaatcagtaatgtaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtgt 9781514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 28723841 - 28723738
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| | |||||||| | ||||||||||||||  || |||||||||||||||   ||| || ||||||||| |||  ||| ||||||||||||||||    
T  28723841 ctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtgaatcgtatctggagggtgaaacaatgtcatccttatataggcgcgc 28723742  T
Q  384 tttg 387  Q
    ||||    
T  28723741 tttg 28723738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 21342354 - 21342260
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||| |||||||||| ||| ||||||||| ||  ||||||||||||||||||    ||| |||||||||||| ||| | |||||||||||||    
T  21342354 ctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaatcatacattgagggtgaagtaaggttacccttatatagg 21342260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 17396796 - 17396840
Alignment:
Q  333 aagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  17396796 aagtgttgtgtaccttgagggtgaagcatgttcacccttatatag 17396840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 17485691 - 17485576
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgta-agaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||||||| |||||| ||||||||| |||| ||||||| ||| |||   ||||||||||||||||||||  |||  | | ||||||||||    
T  17485691 ctcaagtcagtaatggaattgagaaggagtgtgtagagaa-tgttgtgtaaaatgaatagtaccttgagggtgaagcaaaatca--cgtgtataggcgcg 17485595  T
Q  383 ctttggtcataaccgtctc 401  Q
    | |||||||||| ||||||    
T  17485594 cgttggtcataatcgtctc 17485576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 20622469 - 20622524
Alignment:
Q  321 aagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
    ||||| ||||||||||||    ||||||||||||||||||||||||||||||||||    
T  20622469 aagtggtgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatata 20622524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 2311882 - 2311802
Alignment:
Q  303 tgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||||| ||||||  ||||||||||||| ||||    |||||||||||||||||||  |||||||||| ||| |||||    
T  2311882 tgagaaagaatgtgtagaaagtgttgtgaaaggtgaatcataccttgagggtgaagcaatgtcacccttatttagacgcgc 2311802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 403
Target Start/End: Complemental strand, 7835622 - 7835522
Alignment:
Q  303 tgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctct 402  Q
    ||||||| ||| ||||  |||||||||||||||||||  ||| ||||| | ||||||||||||| |||| ||||||  | | |||  |||||||||||||    
T  7835622 tgagaaatagtatgtagaaagtgttgtgaaaagtgatacgtatcttgatgatgaagcaagttcatccttttataggaacacgttgtccataaccgtctct 7835523  T
Q  403 g 403  Q
    |    
T  7835522 g 7835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 21652666 - 21652735
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgaggg 353  Q
    ||||||| |||||||||| | ||| ||| ||||||||||||||| || |||||| | |||||| ||||||    
T  21652666 ctcaagtcagtaatggaactaagagagaatgtgtaagaagtgttatggaaagtgttatgtaccctgaggg 21652735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 14860283 - 14860183
Alignment:
Q  159 ttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggc 258  Q
    |||||||||||||| ||  |||||||||| |||| ||| ||| ||  |||| ||| || |||||||| ||||   |||||||| |||||||| |||||||    
T  14860283 ttgagtagcaacggtggtagagaatgctttgatgggacagtaccgacttccagcatggtggcgatgaatcttcgtggtggaacgaaaggtgcttgcaggc 14860184  T
Q  259 a 259  Q
    |    
T  14860183 a 14860183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 133 - 401
Target Start/End: Complemental strand, 4601697 - 4601437
Alignment:
Q  133 aataatgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttc 232  Q
    |||| ||||||| | |||||||| | |||||||||||||| ||| || ||||||  | |||||||||||  |||||||||| ||||||||| ||||||      
T  4601697 aatattgatctgtctggtgagaacggttgagtagcaacggtggcagaaaatgctctggtgtgacggtaattgtttccggcatggcggcgataagtcttcg 4601598  T
Q  233 cggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtga 331  Q
    ||||||||| ||||||| ||||||||| | ||| ||||||||||||||||||         |||||| || ||||||| | ||||||| ||||| |||||    
T  4601597 cggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtca---------gtaatgaaactgagaaataatgtgtaataagtgctgtga 4601507  T
Q  332 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||  |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  4601506 aatttgatgtgtcccttgagggtgaagcaagttcacccttatatacgcgcgcattggtcatagccgtctc 4601437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 23728887 - 23728771
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  23728887 ctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacccttatataggcgcac 23728788  T
Q  384 tttggtcataaccgtct 400  Q
     |||| |||||||||||    
T  23728787 gttggccataaccgtct 23728771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 149 - 395
Target Start/End: Complemental strand, 14255224 - 14254998
Alignment:
Q  149 gtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggt 248  Q
    ||||||| | |||||||||||||||||| ||||||||| || ||||||||||| || ||||||| |||||||||||||||||   |||||||| || |||    
T  14255224 gtgagaacggttgagtagcaacggcggcagagaatgctccggtgtgacggtaatggcttccggcgcggcggcgatgagtcttcgtggtggaacgaagggt 14255125  T
Q  249 gcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtacct 347  Q
    ||||||| ||| | ||| ||||| |||||||||||         | ||||| || ||||||||||||||||||||||||            |||||||||    
T  14255124 gcctgcaagcacgatagcactccaacgctcaagtc---------attaatgaaactgagaaagagtgtgtaagaagtgt------------tgtgtacct 14255046  T
Q  348 tgagggtgaagcaagttcacccttatataggcgcgctttggtcataac 395  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  14255045 tgagggtgaaacaagttcacccttatataggcacgctttggtcataac 14254998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 148 - 403
Target Start/End: Complemental strand, 21682785 - 21682538
Alignment:
Q  148 ggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaagg 247  Q
    |||||||||| |||||| ||||||| ||| |||||||||| |||| | ||||||| | |||||| ||||||||||||||||| | | ||||||| |||||    
T  21682785 ggtgagaatggttgagtcgcaacggtggcagagaatgctttgatgggtcggtaacagcttccggtacggcggcgatgagtctctgctgtggaacgaaagg 21682686  T
Q  248 tgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaa-agagtgtgtaagaagtgttgtgaaaagtgatgtgtac 345  Q
    |||||  ||| | | | | ||||| ||||||||||||         ||||||||| | |||| |||||||||||||| | ||||||||||| ||||||||    
T  21682685 tgcctataggtacgtttgcactccaacgctcaagtca---------gtaatggaact-agaagagagtgtgtaagaaatattgtgaaaagtaatgtgtac 21682596  T
Q  346 cttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||||||| |||| |||||||||||||||||| || ||| ||||||  |||||||    
T  21682595 cttgagggtgacgcaaattcacccttatataggcgtgcgttgatcataatagtctctg 21682538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 25408120 - 25408237
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||||| || ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| |     
T  25408120 ctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgatgtgtcccttgagggtgaagcaagttcaccctttcataggcgtgt 25408219  T
Q  384 tttggtcataaccgtctc 401  Q
    |||| ||||||| |||||    
T  25408220 tttgttcataactgtctc 25408237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 193 - 403
Target Start/End: Original strand, 26977681 - 26977883
Alignment:
Q  193 tgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtg 291  Q
    |||| |||||||||||||| || |||| ||||| ||||| ||||||||| ||||||||||||||||| | ||| ||||| ||||||||||||            
T  26977681 tgacagtaacggtttccggtacagcggtgatgaatctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtca-------- 26977772  T
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
     |||||||||  |||||||||||||||  |||| ||||||||| |||    ||||||||||||||||||| || ||||||||||||||||||  |||  |    
T  26977773 -gtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaatcataccttgagggtgaagcaatttgacccttatataggcgcgcgatgggaa 26977871  T
Q  392 taaccgtctctg 403  Q
    ||||||||||||    
T  26977872 taaccgtctctg 26977883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 282 - 401
Target Start/End: Original strand, 12177408 - 12177527
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||  | ||||||||||  |||||||||||| ||||||||||| ||    
T  12177408 cactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgaggaggaagcaagttcaaccttatataggtgc 12177507  T
Q  382 gctttggtcataaccgtctc 401  Q
    || |||| |||||| |||||    
T  12177508 gcattgggcataactgtctc 12177527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 21098876 - 21098794
Alignment:
Q  321 aagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||    
T  21098876 aagtgttatgaaaagtgttgtgtaccttgagggtgaagcaagttcacccttatataggtgcgctcttggcataaccgtctctg 21098794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 3590891 - 3590968
Alignment:
Q  325 gttgtgaaaagtgatgtgtacctt-gagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || | | ||||||||||||    
T  3590891 gttgtgaaaagtgttgtgtacctttgagggtgaagcaagttcacccttatataggcgcactcttggcataaccgtctc 3590968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 379
Target Start/End: Original strand, 22414724 - 22414894
Alignment:
Q  201 acggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatgg 299  Q
    ||||||||| | |||| | |||||||||||| ||||||||| ||||||||| ||||||| | ||| |||| |||||||||||||         ||||||     
T  22414724 acggtttccagtacggtgacgatgagtctttgcggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtca---------gtaatga 22414814  T
Q  300 aaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    || ||| ||| ||||||||  ||||||||||||||||||    || ||||||||||||||||||||| |||| |||||||    
T  22414815 aactgaaaaaaagtgtgtagaaagtgttgtgaaaagtgaatcatatcttgagggtgaagcaagttcatccttgtataggc 22414894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 1659856 - 1659762
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||| | |||||||  ||||||||| ||||||||||||||||||||||||||    || |||| ||||| ||||||||||||||||||||||    
T  1659856 ctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaagtgagaaatatcttgtgggtggagcaagttcacccttatatagg 1659762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 377
Target Start/End: Complemental strand, 16299640 - 16299555
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    |||||| ||||||| || |||||||||||| ||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||    
T  16299640 tcaagtaagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtac-------atgaagcaagttcacccttatatag 16299555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 34273111 - 34273205
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||| ||||| |||| ||||||||||||||||  |||||||||| |||||||    |||||||||||||||||||  || ||||||||||||    
T  34273111 ctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgactcataccttgagggtgaagcaatgtcgcccttatatagg 34273205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 48637612 - 48637680
Alignment:
Q  333 aagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||| |||   | ||||||||||||    
T  48637612 aagtgttgtgtaccttgagggtgaaacaagttcacccttatataggcgggctcgtggcataaccgtctc 48637680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 5671794 - 5671848
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 338  Q
    ||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||    
T  5671794 ctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtga 5671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 52565604 - 52565719
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||| |||| ||| |||||||| | |  ||||||||||||||||||    || ||||||||||||||||||||| |||||||| |||| |     
T  52565604 ctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtgaatcataacttgagggtgaagcaagttcatccttatattggcgtg- 52565702  T
Q  384 tttggtcataaccgtctc 401  Q
     |||||||||| ||||||    
T  52565703 -ttggtcataatcgtctc 52565719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 16030419 - 16030516
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||||| |||||||||| |||  |||||||||||  ||||||||||||||||||    ||||||||||| ||||| |   |||||||||||||||||    
T  16030419 ctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggcgaagctaagccacccttatataggcgc 16030516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 23280327 - 23280237
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
    ||||||| |||||||||| |||||||| |||||||   |||||||||||||||||    | || ||||||||||||||||||||| |||||||    
T  23280327 ctcaagtcagtaatggaactgagaaagtgtgtgtat--agtgttgtgaaaagtgaataatgccatgagggtgaagcaagttcacctttatata 23280237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 16050430 - 16050522
Alignment:
Q  296 atggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttgg 388  Q
    |||||| ||||||||||||||||  |||||| |||||||||||    |||||||||| ||||||||   |||||||||||||| |||| ||||    
T  16050430 atggaactgagaaagagtgtgtagaaagtgtggtgaaaagtgaaccataccttgaggatgaagcaatgccacccttatataggtgcgcattgg 16050522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 383
Target Start/End: Complemental strand, 33101574 - 33101475
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    |||||||  ||||||||| ||||||| ||||||||  ||||||||||||||||||   ||| |||||||||||| |||  ||||| |||| ||| |||||    
T  33101574 ctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaaccgtaacttgagggtgaaacaatgtcacctttatgtagacgcgc 33101475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 18246167 - 18246257
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatat 375  Q
    |||||||||||| | ||| ||||||||||||| ||| ||||| || ||||||||||   ||||||||||||||||  |  ||||||||||||    
T  18246167 ctcaagtgagtattagaattgagaaagagtgtataaaaagtg-tgagaaaagtgattcataccttgagggtgaagataagtcacccttatat 18246257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 146 - 401
Target Start/End: Complemental strand, 15742350 - 15742103
Alignment:
Q  146 ccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaa 245  Q
    ||||||| || | |||||| ||||||||||   |||||||| || |||||||||||||||||| | ||||||| |||||||||||   |||||| | |||    
T  15742350 ccggtgaaaaaggttgagtggcaacggcggtatagaatgctccggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtggagcgaaa 15742251  T
Q  246 ggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgta 344  Q
    ||||||||| |||| | ||| ||||  ||||||||||||         ||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  15742250 ggtgcctgctggcacgttagcactcttacgctcaagtca---------gtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtgatgtgta 15742160  T
Q  345 ccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||||||  |||||||| ||||||||||||||||||||  |||| ||||||||||||    
T  15742159 ccttgagactgaagcaaattcacccttatataggcgcgtgttggccataaccgtctc 15742103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 15514628 - 15514511
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15514628 ctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggctcgc 15514529  T
Q  384 tttggtcataaccgtctc 401  Q
      ||||||||||| ||||    
T  15514528 cctggtcataaccatctc 15514511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 5518564 - 5518681
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||| ||| ||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  5518564 ctcaagtcagtaattgaactgagagagaatgtgtaagaagtgttgtggaaagtgatgcgtaccttgagggtgaagcaagttcacccttatataggcgcgt 5518663  T
Q  384 tttggtcataaccgtctc 401  Q
     |||| ||||||||||||    
T  5518664 gttgggcataaccgtctc 5518681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 191 - 401
Target Start/End: Original strand, 12683725 - 12683926
Alignment:
Q  191 tgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaag 289  Q
    ||||||||| ||||||||||  ||| || |||||||||||| ||||||||| ||||||||||||||||| | ||| ||||| |||||||||| |          
T  12683725 tgtgacggtgacggtttccgt-acgacgacgatgagtctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtta------ 12683817  T
Q  290 tgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggt 389  Q
       |||||| || ||||||||||||||||  ||||||||||||||||||    |||||| |||||||||||||||||||||||| ||||||||| ||       
T  12683818 ---gtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttaagggtgaagcaagttcacccttatctaggcgcgcattaag 12683914  T
Q  390 cataaccgtctc 401  Q
    ||||||||||||    
T  12683915 cataaccgtctc 12683926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 377
Target Start/End: Complemental strand, 14602082 - 14601989
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    ||||||| ||||||| || ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  14602082 ctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcatccttatatag 14601989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 394
Target Start/End: Complemental strand, 16012538 - 16012429
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||||| |||||||||||||||  |||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  16012538 ctcaagtcagtaatggaactgagatagagtgtgtaagaagcattgtgagaagtgatatgtatcttga-ggtgaagcaagttcacccttatataggcgcgc 16012440  T
Q  384 tttggtcataa 394  Q
     ||||| ||||    
T  16012439 gttggtaataa 16012429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 285 - 401
Target Start/End: Complemental strand, 1638384 - 1638268
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    |||||| |||||||||| ||||| |||  || |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  1638384 tcaagtcagtaatggaactgagagagaaagtctaagaagtgttaagaaaagtgttgtgtaccttgagggtgaagcaagttcacccttatataggtgcgct 1638285  T
Q  385 ttggtcataaccgtctc 401  Q
       | ||||||||||||    
T  1638284 cgtggcataaccgtctc 1638268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 47253301 - 47253400
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    ||||||||||||||||| |  ||||||||||||||||||||    
T  47253301 ctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaatcataccttgagggtgaagctaagtcacccttatataggcgcgc 47253400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 25066201 - 25066287
Alignment:
Q  317 taagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||    
T  25066201 taagacgtgttgtgaaaagtgttgtgtaccttgaggttgaagcaagtttacccttatataggcgcgcttgtggcataaccgtctctg 25066287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 19643729 - 19643845
Alignment:
Q  287 aagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcttt 386  Q
    |||| |||||||||| ||||||||||||||||  |||| |||||||||||||    ||||||||||||||| |||||||||||||||||||||| || ||    
T  19643729 aagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtgaatcataccttgagggtgaaacaagttcacccttatataggcgtgcgtt 19643828  T
Q  387 ggtcataaccgtctctg 403  Q
    |   |||||||||||||    
T  19643829 gaggataaccgtctctg 19643845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 13896538 - 13896429
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    ||||| |||| ||| | ||| ||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||  |||  ||    
T  13896538 agtaagggaactgaaagagattgtataagaagtgttgtggaaagtgatgtgtaccttgagggtaaagaaagttcacccttatatagacgcgtcttgacca 13896439  T
Q  392 taaccgtctc 401  Q
    ||||||||||    
T  13896438 taaccgtctc 13896429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 401
Target Start/End: Original strand, 18463854 - 18463941
Alignment:
Q  314 gtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||||| |||||||||||||||| |||||| |||||||||||| ||| |||| ||||||||||||||||||  | ||||||||||||    
T  18463854 gtgtaaggagtgttgtgaaaagtgttgtgtatcttgagggtgaaacaatttcatccttatataggcgcgcttgtggcataaccgtctc 18463941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 29157126 - 29157225
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||||||| ||||||||  |||||||||| |||||||    |||||||| ||||||| ||||||||||||||||||||||||    
T  29157126 ctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaaccataccttgatggtgaagtaagttcacccttatataggcgcgc 29157225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 17110756 - 17110821
Alignment:
Q  319 agaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    |||||||||| |||||||  |||||| ||||||||||||||||||||||||||| |||||||||||    
T  17110756 agaagtgttgcgaaaagtattgtgtatcttgagggtgaagcaagttcacccttacataggcgcgct 17110821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 19564026 - 19564079
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  19564026 gttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcaccgttatatagg 19564079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 2674616 - 2674524
Alignment:
Q  309 agagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||||||||  ||||||||||||||||||    |||||||||| ||||| ||||||||||||||||| |||||| |||  ||||||||||||    
T  2674616 agagtgtgtagaaagtgttgtgaaaagtgaatcataccttgaggatgaagtaagttcacccttatataagcgcgcgttgagcataaccgtctc 2674524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 19809725 - 19809824
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||||| || | ||||||||||||||  ||||||||||||||||||  | ||||||||||||||| | |  ||||||||| ||||||||||    
T  19809725 ctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgagggtgaaactaagtcacccttacataggcgcgc 19809824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 12415500 - 12415557
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||| ||||||| ||||||| |||||||| ||| |||||||||||||||||| ||||    
T  12415500 gttgtaaaaagtgttgtgtactttgagggtaaagtaagttcacccttatatagacgcg 12415557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 50151812 - 50151775
Alignment:
Q  343 taccttgagggtgaagcaagttcacccttatataggcg 380  Q
    |||||||||||||||||||  |||||||||||||||||    
T  50151812 taccttgagggtgaagcaaagtcacccttatataggcg 50151775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 10981888 - 10981932
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgt 326  Q
    ||||||||| ||||||||||  |||||||||||||||| ||||||    
T  10981888 cactcaagtcagtaatggaaccgagaaagagtgtgtaaaaagtgt 10981932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 136 - 403
Target Start/End: Original strand, 379600 - 379859
Alignment:
Q  136 aatgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccgg 235  Q
    |||||| || ||||| |||| | |||||| ||||| | ||| ||||||||| || |||||| ||||| | |||||| |||||| |||||||||||  |||    
T  379600 aatgatatgtccggtaagaacggttgagtggcaacagtggcagagaatgctccggtgtgactgtaacagcttccggtacggcgacgatgagtcttcgcgg 379699  T
Q  236 tggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaa 334  Q
    |||||| |||||||| |  ||||| | ||| |||  ||| || ||||||         ||||||||| ||||||||||||||||||||||||||||||||    
T  379700 tggaacgaaaggtgcatctaggcacgttagcactttgacactgaagtca---------gtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaa 379790  T
Q  335 gtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||| ||||||    
T  379791 gtgatgtgtaccttgagggtgaagcaagttcacccgtatataggcgcatgttggtcataaccatctctg 379859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 287 - 393
Target Start/End: Complemental strand, 121075 - 120969
Alignment:
Q  287 aagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcttt 386  Q
    |||| |||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  121075 aagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaaattcacccttatataggcgcgcttt 120976  T
Q  387 ggtcata 393  Q
    | |||||    
T  120975 gttcata 120969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 399
Target Start/End: Complemental strand, 15390792 - 15390537
Alignment:
Q  136 aatgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccgg 235  Q
    ||||||||| | |||||||| | |||||| ||||||| | | |||||||||    |||||||||||||| |||||||||||| ||||||||||||  ||     
T  15390792 aatgatctgtctggtgagaacggttgagtggcaacggtgccagagaatgctctagtgtgacggtaacggcttccggcacggcagcgatgagtcttcgcga 15390693  T
Q  236 tggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaa 334  Q
    |||||| |||| |||||   |||| | ||| |||  |||||||||||     ||||||    ||||| | | ||| ||||||||||||||||||||||||    
T  15390692 tggaacgaaagctgcctattggcacgttagcactttgacgctcaagt-----aagtga----tggaactaataaacagtgtgtaagaagtgttgtgaaaa 15390602  T
Q  335 gtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  15390601 gtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcgtaggccataaccgtc 15390537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 284 - 400
Target Start/End: Original strand, 15825178 - 15825294
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    |||||||  ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  15825178 ctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtcatgtgtaccttgagggtgaagcaagttcacccttgtataggcgcgc 15825277  T
Q  384 tttggtcataaccgtct 400  Q
     ||||||||||||||||    
T  15825278 gttggtcataaccgtct 15825294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 397
Target Start/End: Original strand, 3586302 - 3586500
Alignment:
Q  191 tgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaag 289  Q
    ||||||||| | ||||||||| |||||| || ||||||||| ||||||||  |||||||| ||| |||| | ||| ||||||||||||||||||          
T  3586302 tgtgacggtgaaggtttccggtacggcgacgttgagtctttgcggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagtca------ 3586395  T
Q  290 tgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggt 389  Q
       ||||||||| ||||||| |||| |||  ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  3586396 ---gtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcgcgcgttggt 3586492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 401
Target Start/End: Original strand, 29710962 - 29711157
Alignment:
Q  196 cggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagt 294  Q
    ||||||||| |||| | || ||||||||| |||||  |||||||||||||||||  |||| ||| | ||| ||||| ||||||||||||||             
T  29710962 cggtaacggcttccagtacagcggcgatgcgtcttcgcggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtcact--------- 29711052  T
Q  295 aatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataa 394  Q
    ||||||| |||  ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||    
T  29711053 aatggaattga--aagagagtgtacgaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgcattgggcttaa 29711150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 18135895 - 18135992
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  18135895 ctcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaaagtgatgtatacctagaaggtgaagcaagttcacccttatataggcgc 18135992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 140 - 376
Target Start/End: Complemental strand, 10923368 - 10923140
Alignment:
Q  140 atctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtgga 239  Q
    ||||| |||||||||||| |||||| ||||| ||||| |||||||||  | ||||||||||| ||| ||||| |||| || ||| ||||||  |||||||    
T  10923368 atctgtccggtgagaatggttgagtggcaactgcggcagagaatgctctggtgtgacggtaatggtctccggaacggtggtgattagtcttcgcggtgga 10923269  T
Q  240 acaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 338  Q
    || |||||||  || ||||| | ||  |||||||| |||||||||         || |||||| | | ||||||||||||  ||||| ||||||||||||    
T  10923268 acgaaaggtgtatgtaggcacgttatcactccgacactcaagtca---------gttatggaacttataaagagtgtgtagaaagtgctgtgaaaagtga 10923178  T
Q  339 tgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
     |||| ||||||||||||||||||||||||||||||||    
T  10923177 agtgtgccttgagggtgaagcaagttcacccttatata 10923140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 19050502 - 19050407
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  19050502 ctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtgatgtgtaccctgagagtgaagtaagttcacccttatataggc 19050407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 24157373 - 24157275
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||||||| ||||| | |  || ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  24157373 ctcaagtcagtaatggaactgagagataaagtctaagaagtgttgtgaaaagtattgtgtaccttgagggtgaagcaagttcacccttatataagcgcg 24157275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 24318977 - 24319055
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  24318977 gttgtgaaaagtgttgtgtacattgagggtgaagcaagttcacccttatataggcgcgctcttggcataaccgtctctg 24319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 18772296 - 18772389
Alignment:
Q  308 aagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | | | ||||||||||| |||||    
T  18772296 aagagtgtgtagaaagtgttgtgaaaagtgacgtgcaccttgagggtgaagcaagttcacccttatatagacacacgttggtcataactgtctc 18772389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 24499813 - 24499909
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcg 380  Q
    ||||||| |||||||||||||||||||||||||||  || |||||||||||||||    |||||| ||||||||||||||||||||||||| |||||    
T  24499813 ctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaatcataccttaagggtgaagcaagttcacccttataaaggcg 24499909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 401
Target Start/End: Original strand, 29137795 - 29138043
Alignment:
Q  146 ccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaa 245  Q
    |||||||| | | |||||||||||||||| | ||||||| || | ||||| |||||||| ||||||||||||| ||||||||| |   |||||||| |||    
T  29137795 ccggtgagtacggttgagtagcaacggcgacagagaatgttttggtgtgatggtaacggcttccggcacggcgacgatgagtcatcgaggtggaacgaaa 29137894  T
Q  246 ggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga-tgtgt 343  Q
    | || ||||||| | | ||| || ||||||||||||||         | ||||| || |||||||||||||||||||| ||||||| |||||||   |||    
T  29137895 gatgtctgcaggtacgttagcacaccgacgctcaagtc---------attaatgcaactgagaaagagtgtgtaagaaatgttgtggaaagtgagaatgt 29137985  T
Q  344 accttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||  ||| ||||||||||| ||||  ||||| ||| ||| |||||||||||| ||||    
T  29137986 accccgagagtgaagcaagtccacctctatatgggcacgcgttggtcataaccatctc 29138043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 36267522 - 36267615
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    ||||||| ||||||| || ||||||||||||||||  ||| ||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  36267522 ctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatatag 36267615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 383
Target Start/End: Original strand, 12168998 - 12169096
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    |||||| |||||||||| | ||||||||||||||  ||||||||||||||||||  | |||||||||||||||||||   |||||||| ||||||||||    
T  12168998 tcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgagggtgaagcaatgccacccttaaataggcgcgc 12169096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 19290545 - 19290608
Alignment:
Q  338 atgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  19290545 atgtgtaccttaagggtgaagcaagttcacccttatatagatgcgcttgggtcataaccgtctc 19290608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 19919123 - 19919036
Alignment:
Q  294 taatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||    |||||||||| ||||||||  |||| |||||||||||||    
T  19919123 taatggaaatgagaaagagtatgtagaaagtgttgtgaaaagtgaatcataccttgaggatgaagcaatatcactcttatataggcgc 19919036  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 23257806 - 23257901
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcg 380  Q
    ||||||| ||| | |||||||| || |||||||||  |||||| | |||||||||  ||||||||||||||||| |||| |||||||||||||||||    
T  23257806 ctcaagtcagtgaaggaaatgacaaggagtgtgtagaaagtgtgg-gaaaagtgaattgtaccttgagggtgaatcaaggtcacccttatataggcg 23257901  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 20120371 - 20120489
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||||| || |||||||||||||||   ||||| ||||| ||||||    |||||||||||| || ||||| || ||||||||||| |||     
T  20120371 ctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaatcataccttgagggtaaaacaagtccatccttatataggtgcgt 20120470  T
Q  384 tttggtcataaccgtctct 402  Q
     |||||||||| |||||||    
T  20120471 gttggtcataatcgtctct 20120489  T

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Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 45258219 - 45258125
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||| ||||||| || | ||||||| |||||   ||||||||||||||||||    |||||||||||||||||||  |||||||||||||||    
T  45258219 ctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaaagtcacccttatatagg 45258125  T

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Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 27846585 - 27846512
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaag 358  Q
    |||||| |||||||||| ||||||| ||| ||||  |||||||||| |||||||  ||||||||||||||||||    
T  27846585 tcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaattgtaccttgagggtgaag 27846512  T

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Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 18770338 - 18770393
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgat 339  Q
    ||||||| ||||||| || ||||||||||||||||  |||||||||||||||||||    
T  18770338 ctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtgat 18770393  T

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Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 376
Target Start/End: Original strand, 45714961 - 45715111
Alignment:
Q  218 ggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtg 316  Q
    ||||||||||||| | |||||||| |||||||| |||||||| | ||| ||||| ||||||||||||         |||||| || ||||||||||||||    
T  45714961 ggcgatgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtca---------gtaatgaaactgagaaagagtgtg 45715051  T
Q  317 taagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 376  Q
    ||| |||||| ||||||| |||    |||||||| |||||||| |  |||||||| ||||    
T  45715052 taaaaagtgtggtgaaaattgaatcataccttgaaggtgaagctaagtcacccttgtata 45715111  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 18134350 - 18134418
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgta--agaagtgttgtgaaaagtgatgtgtaccttgagggtgaag 358  Q
    |||||||||| ||||||||||| ||||  | |||| ||||||||| |||  ||||||||||||||||||    
T  18134350 agtaatggaattgagaaagagtatgtagaaaaagtattgtgaaaaatgaattgtaccttgagggtgaag 18134418  T

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Target: scaffold0294 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 310 - 192
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatg-tgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||    
T  310 ctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgagaatgtaccttgagggtgaagcaagttcacccttatctaggcgcg 211  T
Q  383 ctttggtcataaccgtctc 401  Q
    | ||||||||||| |||||    
T  210 cgttggtcataactgtctc 192  T

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Target: scaffold0380 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 401
Target Start/End: Complemental strand, 7012 - 6810
Alignment:
Q  191 tgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaag 289  Q
    |||||||||||||| ||||||||||||| |||||||||||   |||||||| |||| |||  | ||||| | |||  ||| |||||||||||||          
T  7012 tgtgacggtaacggcttccggcacggcgccgatgagtcttcgtggtggaacgaaagatgctggtaggcacgttaggtctctgacgctcaagtca------ 6919  T
Q  290 tgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggt 389  Q
       ||| || || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||     
T  6918 ---gtattgaaactgagaacgagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacccttgtataggcgcacgttggc 6822  T
Q  390 cataaccgtctc 401  Q
    ||||||||||||    
T  6821 cataaccgtctc 6810  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 397
Target Start/End: Complemental strand, 24576730 - 24576537
Alignment:
Q  196 cggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagt 294  Q
    ||||||||| ||| || ||| |||||||||| || | | ||||||| ||||||||||||||||| | ||  |||| |||||||||||||         ||    
T  24576730 cggtaacggcttctggtacgtcggcgatgagactctgcagtggaacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtca---------gt 24576640  T
Q  295 aatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataa 394  Q
    ||||||| | | || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||    
T  24576639 aatggaactaaaaatgagtgtgtaagaagtgttgtgaaaagtaatgtgtaccttgagggtgaaggaagttcacccttatataggcacgcgttgatcataa 24576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 295 - 401
Target Start/End: Complemental strand, 11776299 - 11776193
Alignment:
Q  295 aatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataa 394  Q
    ||||||| ||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| |||| |||||    
T  11776299 aatggaactgagaaagagtgtttaaggagtgttgggaaaagtgatatgtaccttgagggtgaaacaagttcacctttatataggtgcgcgttgggcataa 11776200  T
Q  395 ccgtctc 401  Q
    |||||||    
T  11776199 ccgtctc 11776193  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 23243835 - 23243926
Alignment:
Q  311 agtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctct 402  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||| |||  |||||||||||||    
T  23243835 agtgtgtaagaagtgttgtgaaaagtgatgtgtatcttgagggtgaagcaagttcactcttatatacacgcgccttgagcataaccgtctct 23243926  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 21416762 - 21416879
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||||||| || ||||||||||||||||  |||||||||||||| |||   ||||||| |||||||||||||||||||||| |||||| ||||    
T  21416762 ctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcgtaccttaagggtgaagcaagttcacccttgtataggggcgc 21416861  T
Q  384 tttggtcataaccgtctc 401  Q
     |||| ||||||||||||    
T  21416862 gttgggcataaccgtctc 21416879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 4565427 - 4565360
Alignment:
Q  317 taagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgct 384  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  4565427 taagaagtgttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcacccttatataagcgcgct 4565360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 20055623 - 20055704
Alignment:
Q  319 agaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||  ||||||| ||||    
T  20055623 agaagtgttgtgaaaagtgatgtgtacctt-agggtgaagcaagttcatccttatataggcgcgccttgagcataaccatctc 20055704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 403
Target Start/End: Complemental strand, 3459551 - 3459433
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttg-tgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||| |||||||||| |||| |||||||||||  |||||||| |||||||| |   ||||||||||| |||||||||||||||||||||||||||||    
T  3459551 ctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagtaaatcgtaccttgagg-tgaagcaagttcacccttatataggcgcg 3459453  T
Q  383 ctttggtcataaccgtctctg 403  Q
      |||||| ||||||||||||    
T  3459452 -gttggtcgtaaccgtctctg 3459433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 400
Target Start/End: Complemental strand, 17698350 - 17698236
Alignment:
Q  286 caagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctt 385  Q
    ||||| ||||||||||  |||||||||||||||  ||||||||||||||||||  | ||| ||||||||||||||||  ||||| ||||||||||||| |    
T  17698350 caagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaattatactttgagggtgaagcaaggccacccatatataggcgcgcgt 17698251  T
Q  386 tggtcataaccgtct 400  Q
     |  |||||||||||    
T  17698250 cgagcataaccgtct 17698236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 372
Target Start/End: Complemental strand, 6928159 - 6928069
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcaccctta 372  Q
    ||||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||    |||||||||||||||  || ||||||||||    
T  6928159 cactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaattaatttcaccctta 6928069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 378
Target Start/End: Original strand, 24507482 - 24507575
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    |||||| | |||||||||||||||||||||| ||  ||||||||||||||||||    |||||||||||||||| | |||||||| ||||||||    
T  24507482 tcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtgaatcataccttgagggtgaagtaggttcacccatatatagg 24507575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 30477665 - 30477761
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcg 380  Q
    ||||||| ||||| | || ||||||||||||||||  ||||||||||||||||||    |||||||||||||||| ||  |||||||||||||||||    
T  30477665 ctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagtaatgtcacccttatataggcg 30477761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 383
Target Start/End: Complemental strand, 26916965 - 26916866
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||||| ||||||||||  ||||||||||||||||||    |||||||||  ||||||||  || |||||||||||||||||    
T  26916965 ctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtgagtcataccttgagcatgaagcaatgtcgcccttatataggcgcgc 26916866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 13754782 - 13754877
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| ||||||| || ||||||||||||||||  |||||||||| |||||||    ||||||||||||||||| |  |||| |||||||||||    
T  13754782 ctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcctaccttgagggtgaagctaagtcactcttatataggc 13754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 16214713 - 16214768
Alignment:
Q  346 cttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctc 401  Q
    ||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  16214713 cttgaaggtgaagcaagttcacccttatataggcgcgcttgtggcataaccgtctc 16214768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 18322967 - 18323062
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| |||||| ||| ||||||||| ||||||  || |||||||||||||||    ||| |||||| ||||||||| ||||||||||||||||    
T  18322967 ctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtgaaaagtgaatcatacattgaggatgaagcaaggtcacccttatataggc 18323062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 20055473 - 20055603
Alignment:
Q  146 ccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaa 245  Q
    ||||||||||   |||||| ||||||| ||| ||||||||| |||||   | ||||||| |||||| ||||||||||||| ||||  ||||||||| ||     
T  20055473 ccggtgagaacagttgagtcgcaacggtggcagagaatgctccgatgaatcagtaacggcttccggtacggcggcgatgaatcttcgcggtggaacgaag 20055572  T
Q  246 ggtgcctgcaggca-gctagaactccgacgc 275  Q
    |||| ||||||||| | ||| ||||||||||    
T  20055573 ggtgtctgcaggcacgttagtactccgacgc 20055603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 14666866 - 14666810
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    ||||||||||||  |||||||||| ||||||||| |||||||||||||| |||||||    
T  14666866 gttgtgaaaagttttgtgtaccttaagggtgaagaaagttcacccttatgtaggcgc 14666810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 403
Target Start/End: Original strand, 5859839 - 5859958
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| | |||||||| | ||||| |||||||    |||||| ||| ||||||   ||||||||||  ||||||||| ||||||||||||||||||||    
T  5859839 ctcaagtcaataatggaactaagaaatagtgtgttgagagtgttttgagaagtgaatcgtaccttgagattgaagcaaggtcacccttatataggcgcgc 5859938  T
Q  384 tttggtcataaccgtctctg 403  Q
     ||||  ||||||| |||||    
T  5859939 gttggaaataaccgcctctg 5859958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 13765014 - 13765067
Alignment:
Q  285 tcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 338  Q
    |||||||||||||| || ||||||||||||||||  |||||||||| |||||||    
T  13765014 tcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtga 13765067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 279
Target Start/End: Complemental strand, 11776429 - 11776298
Alignment:
Q  149 gtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaaggt 248  Q
    ||||||| | |||| | ||||||||||| |||||||||  | |||||| |||||  ||| ||||||| ||| ||||||| ||| |||||| || |||| |    
T  11776429 gtgagaacggttgaatggcaacggcggcagagaatgctctggtgtgacagtaactattttcggcacgacggagatgagtatttgcggtgggacgaaagat 11776330  T
Q  249 gcctgcaggca-gctagaactccgacgctcaa 279  Q
    |  |||||||| | ||| ||||||||||||||    
T  11776329 gtttgcaggcacgttagcactccgacgctcaa 11776298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 14666949 - 14666898
Alignment:
Q  233 cggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtca 283  Q
    ||||||||||||||||||||||||||| | ||| ||||||||| ||||||||    
T  14666949 cggtggaacaaaaggtgcctgcaggcacgttagcactccgacgatcaagtca 14666898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 17319634 - 17319588
Alignment:
Q  349 gagggtgaagcaagttcacccttatataggcgcgctttggtcataaccg 397  Q
    |||||||||||||||||||| ||||||||  |||| |||||||||||||    
T  17319634 gagggtgaagcaagttcacctttatatag--gcgcattggtcataaccg 17319588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 23269316 - 23269356
Alignment:
Q  342 gtaccttgagggtgaagcaagttcacccttatataggcgcg 382  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  23269316 gtaccttgagggtgaagcaatgtcacccatatataggcgcg 23269356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 23497193 - 23497133
Alignment:
Q  321 aagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 381  Q
    |||||||||||| |||||    |||||||||||| ||||||  ||||||||||||||||||    
T  23497193 aagtgttgtgaatagtgaatcataccttgagggttaagcaaagtcacccttatataggcgc 23497133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 24070874 - 24070930
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 338  Q
    |||| |||| |||||||||| | ||||||||||||||  ||||||||||| ||||||    
T  24070874 cacttaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtga 24070930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 24677654 - 24677590
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtacctt 348  Q
    ||||||| |||| ||||| ||||| |||  ||||||||||||||||| |||| |||| |||||||    
T  24677654 ctcaagtcagtattggaactgagagagaaagtgtaagaagtgttgtggaaagggatgcgtacctt 24677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 40820 - 40937
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| ||| |||||| ||| | |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  40820 ctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttttataggcgtgc 40919  T
Q  384 tttggtcataaccgtctc 401  Q
      ||||||||||||||||    
T  40920 gctggtcataaccgtctc 40937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 403
Target Start/End: Complemental strand, 21823 - 21566
Alignment:
Q  138 tgatctggccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtg 237  Q
    ||||||| |||||||||| |   |||| ||||||| ||| |||||||||||||||   ||||||||  |||||| ||| ||||||||||||| | | |||    
T  21823 tgatctgtccggtgagaacggccgagtcgcaacggtggcagagaatgcttcgatgaatcggtaacgacttccggtacgacggcgatgagtctctgcagtg 21724  T
Q  238 gaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagt 336  Q
    |||| ||  |||||||| |||| | ||| ||||| || |||||||||         ||| || || ||| | ||||||| |||||||||||||| |||||    
T  21723 gaacgaagtgtgcctgcgggcacgttagcactccaacactcaagtca---------gtattgaaactgaaagagagtgtttaagaagtgttgtggaaagt 21633  T
Q  337 gatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||| |||   |||||||||||||    
T  21632 gatgtgtaccttgagggtgaagcaaattcacccttacatagacgcgccttgagtataaccgtctctg 21566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 215296 - 215389
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 377  Q
    ||||||| ||||||| || ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  215296 ctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcatccttatatag 215389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 400
Target Start/End: Original strand, 4934 - 5178
Alignment:
Q  146 ccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaa 245  Q
    |||||||||| | |||||||||||||||||| ||||||| | || |||||| |||| || ||||||||||| ||||| |||||||   |||||||| |||    
T  4934 ccggtgagaacggttgagtagcaacggcggcagagaatgttccggtgtgacagtaaaggcttccggcacggtggcgaagagtcttcgaggtggaacgaaa 5033  T
Q  246 ggtgcctgcaggcagc----tagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgt 341  Q
    ||||||| ||   | |    |||||||||||| |||| |||| |              || ||||||||  |||||||||||||||||||||||||| ||    
T  5034 ggtgcctacaacaaccacgttagaactccgacactcacgtcatt--------------aactgagaaaggttgtgtaagaagtgttgtgaaaagtgacgt 5119  T
Q  342 gtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtct 400  Q
    | ||||||||||||||||||||||||||||||||||| | ||  || ||||||||||||    
T  5120 gaaccttgagggtgaagcaagttcacccttatataggtgtgcgctgatcataaccgtct 5178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 42309 - 42391
Alignment:
Q  321 aagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctctg 403  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||    
T  42309 aagtgttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcacccttatataggcccgctcttggcataaccgtctctg 42391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 6322 - 6439
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| |||||||||| ||||||| ||||||||  ||||||||||||||||||   |||||||||| |||||||||||||| |||||||||||||| |    
T  6322 ctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtgagtcgtaccttgagcgtgaagcaagttcatccttatataggcgcac 6421  T
Q  384 tttggtcataaccgtctc 401  Q
     |||  ||||||||||||    
T  6422 gttgaacataaccgtctc 6439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 402
Target Start/End: Original strand, 9029 - 9116
Alignment:
Q  315 tgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctct 402  Q
    |||||||||||||||||||| | |||||||||||||||||| || | |||||||||||||||||| ||| ||||||||||||||||||    
T  9029 tgtaagaagtgttgtgaaaaattatgtgtaccttgagggtggagaaggttcacccttatataggcccgcgttggtcataaccgtctct 9116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 4491 - 4396
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| | ||||| || ||| | |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4491 ctcaagtcactaatgaaactgaaagagagagtgtaagaagtgttatgaaaaatgatgtgtaccttgagggtgaagcaagttcacccttatataggc 4396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 376
Target Start/End: Original strand, 11410 - 11628
Alignment:
Q  146 ccggtgagaatgtttgagtagcaacggcggctgagaatgcttcgatgtgacggtaacggtttccggcacggcggcgatgagtctttccggtggaacaaaa 245  Q
    |||||||||| | |||||||||||| ||||| ||||||| |||  ||||||||||| || ||| ||||||||||||| |||||||   |||||||| ||     
T  11410 ccggtgagaacggttgagtagcaacagcggcagagaatgtttctgtgtgacggtaaaggcttctggcacggcggcgaagagtcttcaaggtggaacgaat 11509  T
Q  246 ggtgcctgcaggca-gctagaactccgacgctcaagtcactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgta 344  Q
    ||||||| ||  || | ||| ||||| |||||||  ||| |         ||||||| ||||||||||||| ||||   ||||||||||||||||||| |    
T  11510 ggtgcctacaaccatgttagcactccaacgctcacctcatt---------aatggaactgagaaagagtgtataag---tgttgtgaaaagtgatgtg-a 11596  T
Q  345 ccttgagggtgaagcaagttcacccttatata 376  Q
    ||||||||||||| ||||||||||||||||||    
T  11597 ccttgagggtgaaccaagttcacccttatata 11628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 20564 - 20447
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgc 383  Q
    ||||||| | ||| |||| ||||||||||||||||  || |||| ||||||||||||||||||||| |||||||  || ||||||| |||||||||||||    
T  20564 ctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatgaaaagtgatgtgtaccttgtgggtgaaataaattcacccatatataggcgcgc 20465  T
Q  384 tttggtcataaccgtctc 401  Q
     ||||||||| |||||||    
T  20464 gttggtcatagccgtctc 20447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 15489 - 15383
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    |||||||||| ||||||||||| | ||  ||||||||||||||||||    |||||||||||||||||||||||||||||||||||| || | || ||||    
T  15489 agtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggtgcacgttagtca 15390  T
Q  392 taaccgt 398  Q
    |||||||    
T  15389 taaccgt 15383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 13946 - 14040
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagg 378  Q
    ||||||| ||||||| || ||||||||||||||||  ||||||||||| ||||||    |||||||||||||||||||| |||||||||||||||    
T  13946 ctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttgagggtgaagcaagatcacccttatatagg 14040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 95877 - 95782
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| |||||||||| |||||||||||| |||  ||||||||||||||||||    |||||| ||||||||||||  ||||||||||||||||    
T  95877 ctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaatcataccttcagggtgaagcaacgtcacccttatataggc 95782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 53299 - 53222
Alignment:
Q  325 gttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtcataaccgtctct 402  Q
    ||||| ||||||| ||||||||  |||| |||||||||||||||||||||||||||||||   | |||||||||||||    
T  53299 gttgttaaaagtgttgtgtacccagaggttgaagcaagttcacccttatataggcgcgctcgtggcataaccgtctct 53222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 35275 - 35327
Alignment:
Q  282 cactcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaa 334  Q
    ||||||||| ||||| |||| |||||||||||||||   ||||||||||||||    
T  35275 cactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaa 35327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 68867 - 68774
Alignment:
Q  284 ctcaagtgagtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggc 379  Q
    ||||||| |||||||||| ||||||||||| |  ||  |||||||||||||||||    ||||||||||| |||||||| ||||||||||||||||    
T  68867 ctcaagttagtaatggaactgagaaagagtatagaa--agtgttgtgaaaagtgaatcataccttgagggagaagcaaggtcacccttatataggc 68774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 73861 - 73752
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgcgctttggtca 391  Q
    |||||||||  ||| |||||||| |||  |||||||||||||||| |    |||||| |||||||||||||||||||  ||||||||||||  ||||  |    
T  73861 agtaatggatttgaaaaagagtgcgtagaaagtgttgtgaaaagtaaatcataccttcagggtgaagcaagttcaccaatatataggcgcgtgttgggta 73762  T
Q  392 taaccgtctc 401  Q
    ||||||||||    
T  73761 taaccgtctc 73752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 7917 - 7963
Alignment:
Q  292 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 338  Q
    ||||||| || ||||||||||||||||  ||||||||||||||||||    
T  7917 agtaatgcaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 7963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 69333 - 69283
Alignment:
Q  234 ggtggaacaaaaggtgcctgcaggca-gctagaactccgacgctcaagtca 283  Q
    |||||||||||||||||||||||||| | ||| ||||| ||||||||||||    
T  69333 ggtggaacaaaaggtgcctgcaggcacgttagcactccaacgctcaagtca 69283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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