View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_130 (Length: 214)
Name: NF10841_low_130
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_130 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 15183727 - 15183631
Alignment:
| Q |
18 |
aacatcctctaacaaataatcaagtattcaatcatagcttaactagaaatactccatcacaatctta-atttttttggttacaaggcaaatgaaagg |
113 |
Q |
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| T |
15183727 |
aacatcctctaacaaataatcaagtattcaatcatagcttaactagaaatactccatcacaatcttatttttttttggttacaaggcaaatgaaagg |
15183631 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 15183590 - 15183549
Alignment:
| Q |
158 |
ggaactactctatagaaaagagagttcaagccgcgttcatct |
199 |
Q |
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| T |
15183590 |
ggaactactctatagaaaagagagttcaagccgcgttcatct |
15183549 |
T |
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