View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_136 (Length: 206)
Name: NF10841_low_136
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_136 |
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Alignment Details
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 4570844 - 4570796
Alignment:
| Q |
140 |
gggtgtgccattgacaggtaaagctcctaagaaagaagattatcgttat |
188 |
Q |
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| T |
4570844 |
gggtgtgccattgacaggtaaagctcctaagaaagaagattatcgttat |
4570796 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 4570887 - 4570841
Alignment:
| Q |
61 |
agaatgttaaccgccccactagggagagattaattcatttgtcgggt |
107 |
Q |
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| T |
4570887 |
agaatgttaaccgccccactagggagagattaattcatttgtcgggt |
4570841 |
T |
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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 4570990 - 4570937
Alignment:
| Q |
14 |
cagagatgcaaattaatcgtgttattgaaattcttgggaaattttgtagaatgt |
67 |
Q |
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| T |
4570990 |
cagagatgcaaattaattgtgttactaaaattcttgggaatttttgtagaatgt |
4570937 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 9572935 - 9572845
Alignment:
| Q |
94 |
ttcatttgtcgggttttagagaaacttata-ctcttggaaagtatttgggtgtgccattgacaggtaaagctcctaagaaagaagattatc |
183 |
Q |
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| T |
9572935 |
ttcatttgttgggttttagagaaactcatttctcttggaaagtatctcggagttccgttgacaggtagagctcctaagaaagaggattatc |
9572845 |
T |
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