View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_141 (Length: 202)

Name: NF10841_low_141
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_141
NF10841_low_141
[»] chr5 (7 HSPs)
chr5 (18-187)||(33821283-33821452)
chr5 (25-186)||(33733813-33733974)
chr5 (119-169)||(33748520-33748570)
chr5 (119-169)||(33834640-33834690)
chr5 (25-112)||(33762371-33762458)
chr5 (117-177)||(33762493-33762553)
chr5 (74-186)||(33904083-33904195)
[»] chr8 (1 HSPs)
chr8 (25-187)||(21305552-21305714)
[»] chr7 (1 HSPs)
chr7 (26-167)||(5471492-5471633)
[»] scaffold0023 (1 HSPs)
scaffold0023 (24-172)||(114503-114645)
[»] scaffold0001 (1 HSPs)
scaffold0001 (75-186)||(148469-148580)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 33821283 - 33821452
Alignment:
Q  18 gttcttttcttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaactgtccgaccacattccacatggtacggga 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821283 gttctcttcttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaactgtccgaccacattccacatggtacggga 33821382  T
Q  118 acattacctagactttgttgtgaagcagaagcacaatctctaccaatttgatttgaaaccataatctctg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821383 acattacctagactttgttgtgaagcagaagcacaatctctaccaatttgatttgaaaccataatctctg 33821452  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 33733813 - 33733974
Alignment:
Q  25 tcttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaactgtccgaccacattccacatggtacgggaacattac 124  Q
    |||||||  ||||||| |||||||||||  ||| ||  ||||||||| ||||||| ||||||| |||||||| ||| | |||| ||||  |||||||||     
T  33733813 tcttgtattgaagagcctgagccaatttgctcactgcctacttgttcacccaagtcccataaattgtccgacgacaatgcacacggtattggaacattat 33733912  T
Q  125 ctagactttgttgtgaagcagaagcacaatctctaccaatttgatttgaaaccataatctct 186  Q
    ||| |||| ||||||||||||||||||| ||||||||| |||||| || ||||||| |||||    
T  33733913 ctatacttggttgtgaagcagaagcacagtctctaccattttgatatgtaaccatagtctct 33733974  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 33748520 - 33748570
Alignment:
Q  119 cattacctagactttgttgtgaagcagaagcacaatctctaccaatttgat 169  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  33748520 cattacctagtcttggttgtgaatcagaagcacaatctctaccaatttgat 33748570  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 33834640 - 33834690
Alignment:
Q  119 cattacctagactttgttgtgaagcagaagcacaatctctaccaatttgat 169  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  33834640 cattacctagtcttggttgtgaatcagaagcacaatctctaccaatttgat 33834690  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 33762371 - 33762458
Alignment:
Q  25 tcttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaactgtccgaccacattccacatggta 112  Q
    |||||||| |||||||||||||||||||| ||| ||| |||| | |||||||||||||| ||| | || | | ||||| |||||||||    
T  33762371 tcttgtaatgaagagcatgagccaattttctcactgtctactggctcccccaagttccacaaattatcggtcaacattgcacatggta 33762458  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 33762493 - 33762553
Alignment:
Q  117 aacattacctagactttgttgtgaagcagaagcacaatctctaccaatttgatttgaaacc 177  Q
    ||||||| ||| |||| |||||||||  ||| || |||||||||||| |||||||||||||    
T  33762493 aacattatctatacttggttgtgaagaggaaacataatctctaccaacttgatttgaaacc 33762553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 33904083 - 33904195
Alignment:
Q  74 ccaagttccataaactgtccgaccacattccacatggtacgggaacattacctagactttgttgtgaagcagaagcacaatctctaccaatttgatttga 173  Q
    |||||||| ||||||||||| || ||||| |||| ||||  ||| || |||| |||||| |||| ||| ||  | ||  ||||||||||||||| |||||    
T  33904083 ccaagttcaataaactgtcccacaacattgcacacggtattggagcactaccaagacttggttgggaaacaccaacaatatctctaccaatttggtttga 33904182  T
Q  174 aaccataatctct 186  Q
    | || ||||||||    
T  33904183 atccgtaatctct 33904195  T

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Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 21305552 - 21305714
Alignment:
Q  25 tcttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaactgtccgaccacattccacatggtacgggaacattac 124  Q
    |||||||| ||||||||||| |||||||| ||| ||| ||| ||||| ||||||||||| ||||||||  |||||||| |||||||||  ||  ||||||    
T  21305552 tcttgtaatgaagagcatgacccaattttctcactgtctacatgttctcccaagttccacaaactgtcacaccacatttcacatggtattggggcattac 21305651  T
Q  125 ctagactttgttgtgaagcagaagcacaatctctaccaatttgatttgaaaccataatctctg 187  Q
    |||||  | ||| ||||| ||||||||| ||||||||||||||||||||| ||||| ||||||    
T  21305652 ctagatctggttttgaagtagaagcacactctctaccaatttgatttgaagccatattctctg 21305714  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 5471633 - 5471492
Alignment:
Q  26 cttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaactgtccgaccacattccacatggtacgggaacattacc 125  Q
    ||||||| |||||| | || |||||| | ||| | | |||||| |||||||||||||||||||| || |||||||||  ||| ||||  || ||||||||    
T  5471633 cttgtaatgaagaggacgatccaattatctcactatctacttgctcccccaagttccataaactttctgaccacattgtacaaggtattgggacattacc 5471534  T
Q  126 tagactttgttgtgaagcagaagcacaatctctaccaatttg 167  Q
    |||| || ||||||||| ||||||||||||| ||||||||||    
T  5471533 tagaattggttgtgaagaagaagcacaatctttaccaatttg 5471492  T

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Target: scaffold0023 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 114645 - 114503
Alignment:
Q  24 ttcttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaactgtccgaccacattccacatggtacgggaacatta 123  Q
    ||||||||| |||||| |||||| |||| ||||| ||  |||||| ||||||| |||||||||| |||||||||||||| |||| |||| ||| ||||||    
T  114645 ttcttgtaatgaagagtatgagcaaattctgtcattgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaaggggacatta 114546  T
Q  124 cctagactttgttgtgaagcagaagcacaatctctaccaatttgatttg 172  Q
     ||||     ||||||||| ||||||||||||||||||| ||| |||||    
T  114545 -ctag-----gttgtgaagtagaagcacaatctctaccacttttatttg 114503  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 148469 - 148580
Alignment:
Q  75 caagttccataaactgtccgaccacattccacatggtacgggaacattacctagactttgttgtgaagcagaagcacaatctctaccaatttgatttgaa 174  Q
    ||||||| |||||| |||| |||||||| |||| ||||  ||| ||||||| |||||| ||| |||| ||  | ||  ||||||||||||||| |||| |    
T  148469 caagttcaataaaccgtcccaccacattgcacacggtattggagcattaccaagacttggttctgaaacaccaacaatatctctaccaatttggtttgga 148568  T
Q  175 accataatctct 186  Q
    ||| ||||||||    
T  148569 accgtaatctct 148580  T

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