View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_15 (Length: 406)
Name: NF10841_low_15
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 33709986 - 33710360
Alignment:
| Q |
20 |
gcagtgcctttcaattgggagcatgtacctcaaacatgcaaaggtacccatggaaaatttaccaagccattgaatgattcataatttttcagttgtgaga |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33709986 |
gcagtgcccttcaattgggagcatgtacctcaaagatgcaaaggtacccatggaaaatttaccaagccattgaatgattcataatttttcagttgtgaga |
33710085 |
T |
|
| Q |
120 |
tgatatatagttatttttagagtaacatgttctcattataactataacatacaagtttagattttatatggcctatcctttatgacgatacca------a |
213 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
33710086 |
tgatatatggttatttttagagtgacatgttctcattataactataacatacaagtttagattttatatggcctatcctttctgacgataccaattacca |
33710185 |
T |
|
| Q |
214 |
accattaaaagttagttcacaatcaaatgcaattctctcatcctgtccactttctatatcaatacacaaaatgtcctacaattcctggcttacaattgtc |
313 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33710186 |
accattaaaagttagctcataatcaaatgcaattctctcatcctgtccactttctatatcaatacacaaaatgtcctacaattcctggcttacaattgtt |
33710285 |
T |
|
| Q |
314 |
cagccactacttcaaaaagctaaaattgaaaaaactcaacacctccaaataatgtaaatgttgtctccacctttg |
388 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
33710286 |
ctgccactactccaaaaagctaaaattgaaaaaactcaacacctccatataatgtaaatgttgtctccacttttg |
33710360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University