View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_17 (Length: 400)
Name: NF10841_low_17
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 169808 - 169984
Alignment:
| Q |
13 |
tcatcatccaaatgtcatcaaacttgaagggatcataccttgtacctcatttttgaatatatggtaacttggcgggcattgttgcaaggccagtaaaatg |
112 |
Q |
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| T |
169808 |
tcatcatccaaatgtcatcaaacttgaagggagcataccttgtacctcatttttgaatatatggtaacttggcgggcattgttgcaaggccagtaaaatg |
169907 |
T |
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| Q |
113 |
acatgtattatttgctgaatgtgattgattacaagggtttcccctctaacccccagagcaagctgagaagaattccc |
189 |
Q |
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| T |
169908 |
aaatgtattatttgctgaatgtgattgattacaagggtttcccctctaacccccagagcaagctgagaagaattccc |
169984 |
T |
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Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 234 - 387
Target Start/End: Original strand, 169984 - 170137
Alignment:
| Q |
234 |
ccttctacctacccatcatctcattccaccctatattcctcttggcccataactaactctttccccactctcttatgcaatcccccattctagaatatat |
333 |
Q |
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| T |
169984 |
ccttctacctacccatcatctcattccaccctatattcctcttggcccataactaactcttcccccactctcttatgcaatcccccattctagaatatat |
170083 |
T |
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| Q |
334 |
atcttccatattttggttcccctgctaagattgtcaattggacccataccctct |
387 |
Q |
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| T |
170084 |
atcttccatattttggttcccctgctaagagtgtaaattggacccataccctct |
170137 |
T |
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