View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_18 (Length: 400)
Name: NF10841_low_18
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 20047645 - 20047270
Alignment:
| Q |
20 |
cattaatcaatcatgatgcagtttggaaagaattataaacataagagttttgcatttgttccagtattgcttagattcacttcattgttttttcatcaca |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20047645 |
cattaatcactcatgatgcagtttggaaataattataaacatgaaagttttgcattagttccagtattgcttagattcacttcattgttttttcatcaca |
20047546 |
T |
|
| Q |
120 |
ttaaccaagtgttctcaccatacatgccaatactacttctaaataagtcacacaatcatatcagttaataaaaacatatagcataactcatcaaaactag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20047545 |
ttaaccaagtgttctcaccatacatgccaatactacttctaaataagtcacacaatcatatcagttaataaaaatatatagcataactcatcaaaactaa |
20047446 |
T |
|
| Q |
220 |
tcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaagataact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20047445 |
tcttaaaatttatccttcatttgttatcaacaaaatagagagtatgaaaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaagataact |
20047346 |
T |
|
| Q |
320 |
ttttaagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttcacccctttgcttct |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
20047345 |
ttttaagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttccccccttttcttct |
20047270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 348
Target Start/End: Original strand, 20014596 - 20014798
Alignment:
| Q |
143 |
atgccaatactacttctaaataagtcacacaatcatatcagttaataaaaacatatagcataactcatcaaaactagtcttaaaatttatccttcatttg |
242 |
Q |
| |
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|||||||||||| || | |||| | || |||||||||||||||||||||||||||| |||||||||||||| ||||| || | || ||||||||| |
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|
| T |
20014596 |
atgccaatactaattaaagataaataacccaatcatatcagttaataaaaacatatatcataactcatcaaagctagtatt--acttccgccttcatttc |
20014693 |
T |
|
| Q |
243 |
ttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaagataactttttaagatgaagatggtggctg |
342 |
Q |
| |
|
||||||||||||| ||||||||| ||| || |||| || | ||||| | ||||| ||||||||||||| | || |||||||| ||||||||||| | |
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|
| T |
20014694 |
ttatcaacaaaatggagagtatgaaaaaagtgtcaccgtaacgagtttcaggaacagaattcaaaaacaaca-aaaattttaagaagaagatggtggtgg |
20014792 |
T |
|
| Q |
343 |
ttgatt |
348 |
Q |
| |
|
|||||| |
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|
| T |
20014793 |
ttgatt |
20014798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 19983316 - 19983262
Alignment:
| Q |
163 |
taagtcacacaatcatatcagttaataaaaacatatagcataactcatcaaaact |
217 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
19983316 |
taagtaacataatcatatcagttaataaaaatatataccataactcatcaaaact |
19983262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 19952935 - 19952815
Alignment:
| Q |
142 |
catgccaatactacttctaaataagtcacacaatcatatcagttaataaaaacatatagcataactcatcaaaactagtcttaaaatttatccttcattt |
241 |
Q |
| |
|
||||||||||||||| || |||| | |||||| |||| ||| |||||||||||| | ||| ||||| |||||||| |||| ||| |||||||||| |
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|
| T |
19952935 |
catgccaatactacta-tagataaataacacaagcatagcagaaaataaaaacataaatcatctctcataaaaactagcattaa--tttctccttcattt |
19952839 |
T |
|
| Q |
242 |
gttatcaacaaaatagagagtatg |
265 |
Q |
| |
|
|||||||||||| ||||| ||||| |
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|
| T |
19952838 |
gttatcaacaaattagagggtatg |
19952815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 19983244 - 19983197
Alignment:
| Q |
204 |
aactcatcaaaactagtcttaaaatttatccttcatttgttatcaaca |
251 |
Q |
| |
|
||||||||||||||| | | | |||||||||||||||||||||||||| |
|
|
| T |
19983244 |
aactcatcaaaactaatataagaatttatccttcatttgttatcaaca |
19983197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 202 - 387
Target Start/End: Original strand, 12578733 - 12578915
Alignment:
| Q |
202 |
ataactcatcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaa |
301 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||| | |||| | || |
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|
| T |
12578733 |
ataactcatcaaaaatagtcttacaatttatccttcatttattatcaacaaagtagagagtatggaaagagaatcattgtcataagtaggctgaagagaa |
12578832 |
T |
|
| Q |
302 |
ttcaaaaacaagataactttttaagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttcacccct |
387 |
Q |
| |
|
|||||||||||||| | || |||| ||||||||| | ||||| || ||| || || |||||||| |||| ||||| ||| |||| |
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|
| T |
12578833 |
ttcaaaaacaagatcatttattaa---gaagatggtcgttgttggttcctttgaacaatgaggcgtagcctaaactcgtcatccct |
12578915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 202 - 387
Target Start/End: Original strand, 12494634 - 12494817
Alignment:
| Q |
202 |
ataactcatcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaa |
301 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| | || |
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|
| T |
12494634 |
ataactcatcaaaaatagtcttacaatttatc-----tttgttatcaacaaaatagagagtatggaaagagaatcattgtcataagtaggatgaagagaa |
12494728 |
T |
|
| Q |
302 |
ttcaaaaacaagataacttttt---aagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttcacccct |
387 |
Q |
| |
|
|||||||||||||| | || || |||||||||||||| | |||||||| ||| || || |||||||| |||| ||||| ||| |||| |
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|
| T |
12494729 |
ttcaaaaacaagatcatttattaagaagatgaagatggtcgttgttgattcctttgaacaatgaggcgtagcctaaactcgtcatccct |
12494817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 12518443 - 12518609
Alignment:
| Q |
202 |
ataactcatcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaa |
301 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||| | || |
|
|
| T |
12518443 |
ataactcatcaaaaatagtcttacaatttatc-----tttgttatcaacaaaatagag--tatggaaaccgaatcattgtcataagtaggatgaagagaa |
12518535 |
T |
|
| Q |
302 |
ttcaaaaacaagataacttttt---aagatgaagatggtggctgttgatttcttagagcactgaggcgttgcct |
372 |
Q |
| |
|
|||||||||||||| | || || |||||||||||||| | |||||||| ||| || || |||||||| |||| |
|
|
| T |
12518536 |
ttcaaaaacaagatcatttattaagaagatgaagatggtcgttgttgattcctttgaacaatgaggcgtagcct |
12518609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 169 - 387
Target Start/End: Original strand, 26353347 - 26353569
Alignment:
| Q |
169 |
acacaatcatatcagttaataaaaacatatagcataactcatcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaa |
268 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||||||| ||||||||| ||| || ||||||| ||||| |||||| ||| |||||||| || |
|
|
| T |
26353347 |
acacaagcatatcagttaataaaaatatatagattaactcattaaaactagtattac--ttattccttcaattgttttcaacacaatcaagagtatgaaa |
26353444 |
T |
|
| Q |
269 |
agagaatcactgtcataagtttgatgaacaaaattcaaaaacaagataactttttaagatgaa---gatggtggctgttgatttcttagagcac---tga |
362 |
Q |
| |
|
|||| ||||||||| | ||||| ||||| ||||||||||||| |||| |||||||| ||| |||||||| |||||||| | ||| ||| ||| |
|
|
| T |
26353445 |
agagcatcactgtcgtgagtttcatgaagggaattcaaaaacaaaataaagttttaagaagaagatgatggtggttgttgattcttcagaacactagtga |
26353544 |
T |
|
| Q |
363 |
ggcgttgcctcaactcttcacccct |
387 |
Q |
| |
|
|| ||||||||||||||||| |||| |
|
|
| T |
26353545 |
ggagttgcctcaactcttcatccct |
26353569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 1718829 - 1718687
Alignment:
| Q |
169 |
acacaatcatatcagttaataaaaacatatag--cataactcatcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgt |
266 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||||||| ||||||| | ||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
1718829 |
acacaagcatatcagttaataaaaatttatacatcataactcattaaaactaatattac--tttctccttcatttgttatcaacaaaatgaagagtat-a |
1718733 |
T |
|
| Q |
267 |
aaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaa |
312 |
Q |
| |
|
|||||| |||| |||||| ||||| || || |||| |||||||||| |
|
|
| T |
1718732 |
aaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaa |
1718687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 25999538 - 25999642
Alignment:
| Q |
179 |
atcagttaataaaaacatatagcataactcatcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaa-gagaatca |
277 |
Q |
| |
|
||||| ||||||||||||| | ||||| | | | |||||||| |||| ||| |||||||||||||||||||||||||| || |||| ||| ||| |||| |
|
|
| T |
25999538 |
atcagataataaaaacatacatcataaattacctaaactagtattaa--tttctccttcatttgttatcaacaaaatagggaatatgaaaacgagcatca |
25999635 |
T |
|
| Q |
278 |
ctgtcat |
284 |
Q |
| |
|
||||||| |
|
|
| T |
25999636 |
ctgtcat |
25999642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 22651737 - 22651773
Alignment:
| Q |
186 |
aataaaaacatatagcataactcatcaaaactagtct |
222 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
22651737 |
aataataacatatatcataactcatcaaaactagtct |
22651773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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