View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_19 (Length: 395)

Name: NF10841_low_19
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_19
NF10841_low_19
[»] chr6 (3 HSPs)
chr6 (19-374)||(34693858-34694213)
chr6 (128-203)||(34697645-34697720)
chr6 (131-203)||(34720416-34720488)
[»] chr2 (15 HSPs)
chr2 (19-374)||(26991600-26991955)
chr2 (17-130)||(27031507-27031621)
chr2 (128-203)||(26995305-26995380)
chr2 (128-194)||(27064684-27064750)
chr2 (242-308)||(27072634-27072700)
chr2 (128-203)||(27013291-27013366)
chr2 (209-286)||(27032110-27032189)
chr2 (152-203)||(27032026-27032077)
chr2 (241-284)||(27064639-27064682)
chr2 (209-298)||(27013166-27013258)
chr2 (69-130)||(27073296-27073356)
chr2 (60-106)||(4307504-4307550)
chr2 (325-371)||(27013032-27013077)
chr2 (17-62)||(27073352-27073395)
chr2 (325-354)||(27064512-27064541)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 34693858 - 34694213
Alignment:
Q  19 aatctcattaccataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34693858 aatctcattaccataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattat 34693957  T
Q  119 ctaattacacttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttatgaagtactt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34693958 ctaattacacttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttacgaagtactt 34694057  T
Q  219 taaaaacagaacaataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacacn 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34694058 taaaaacagaacaataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacact 34694157  T
Q  319 nnnnnnaaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaagag 374  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34694158 ttttttaaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaagag 34694213  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 34697645 - 34697720
Alignment:
Q  128 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 203  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  34697645 cttcccaaggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaa 34697720  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 34720488 - 34720416
Alignment:
Q  131 cccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 203  Q
    ||||| || ||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||    
T  34720488 cccaaggtccatcaccaactccgaccaaaactatagcaagtggatatttactgtatcgtagataaagaatgaa 34720416  T

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Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 26991600 - 26991955
Alignment:
Q  19 aatctcattaccataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26991600 aatctcattaccataaaaacatagtggattacaagcttaactagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaattat 26991699  T
Q  119 ctaattacacttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttatgaagtactt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26991700 ctaattacacttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaaagttacgaagtactt 26991799  T
Q  219 taaaaacagaacaataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacacn 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26991800 taaaaacagaacaataagaacagaaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcctaaatacact 26991899  T
Q  319 nnnnnnaaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaagag 374  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26991900 ttttttaaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaagag 26991955  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 27031507 - 27031621
Alignment:
Q  17 gtaatctcattaccataaaaacatagtggattacaagcttaac--tagttagttactagactgtgcaattacttgttagacaggtaattgtcatagttaa 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||||||||  ||||||    
T  27031507 gtaatctcgttaccataaaaacatagtggattacaagcttaactatagttagttactagactgtgcaattacttgttacacaagtaattgtctaagttaa 27031606  T
Q  115 ttatctaattacactt 130  Q
     |||||||||||||||    
T  27031607 -tatctaattacactt 27031621  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 26995305 - 26995380
Alignment:
Q  128 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 203  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  26995305 cttcccaaggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaa 26995380  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 27064750 - 27064684
Alignment:
Q  128 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaata 194  Q
    |||||||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  27064750 cttcccaaggtccatcaccaactccgaccagaactatagcaagtggatatttactgtatcgtaaata 27064684  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 27072700 - 27072634
Alignment:
Q  242 aaaagagtttcataatagtcctaaataatgaaagttatgttcatggtttctaaatgaaatttagtcc 308  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  27072700 aaaagagtttgataatagtcctaaataaagaaagttatgtccatggtttgtaaatgaaatttagtcc 27072634  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 27013366 - 27013291
Alignment:
Q  128 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 203  Q
    |||||||| || ||||||||||||| |  ||||||||||||||||||||||||||||||| || ||||||||||||    
T  27013366 cttcccaaggtccatcaccaactccgatcagaactatagcaagtggatatttactgtatcatagataaagaatgaa 27013291  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 27032110 - 27032189
Alignment:
Q  209 tgaagtactttaaaaacagaacaataagaacagaa--aagagtttcataatagtcctaaataatgaaagttatgttcatg 286  Q
    ||||||| |||||||||||||||||| ||| ||||  || ||| ||||||||||||||||||||||||||| ||| ||||    
T  27032110 tgaagtattttaaaaacagaacaataggaaaagaataaatagtatcataatagtcctaaataatgaaagttgtgtgcatg 27032189  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 27032026 - 27032077
Alignment:
Q  152 caactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 203  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  27032026 caaccagaactatagcaagtggatatttactgtatcataaataaagagtgaa 27032077  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 27064682 - 27064639
Alignment:
Q  241 gaaaagagtttcataatagtcctaaataatgaaagttatgttca 284  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  27064682 gaaaagagtttcataatagtcctaaataatgaaaggtatgttca 27064639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 27013258 - 27013166
Alignment:
Q  209 tgaagtactttaaaaacagaacaataagaacagaa--aagagtttcataatagtcc-taaataatgaaagttatgttcatggtttctaaatga 298  Q
    ||||||||| |||||||||||||||| ||| ||||  || ||  ||||| |||||| |||||||||||| || ||||||||||||||||||||    
T  27013258 tgaagtactataaaaacagaacaataggaaaagaataaatagcatcatattagtccctaaataatgaaaattgtgttcatggtttctaaatga 27013166  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 27073356 - 27073296
Alignment:
Q  69 actagactgtgcaattacttgttagacaggtaattgtcatagttaattatctaattacactt 130  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||| |||||||||||||||    
T  27073356 actagactgtgcaattacttgttacacaagtaattgtctaagttaa-tatctaattacactt 27073296  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 4307504 - 4307550
Alignment:
Q  60 tagttagttactagactgtgcaattacttgttagacaggtaattgtc 106  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  4307504 tagttagttactagactctgcaattacttgttacacaagtaattgtc 4307550  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 27013077 - 27013032
Alignment:
Q  325 aaccttaaaatccaacaaattcatatgaattgacaatcacatgcaaa 371  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||    
T  27013077 aaccttaaaatccaacaa-ttcatatgaattgacaatcatatgcaaa 27013032  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 27073395 - 27073352
Alignment:
Q  17 gtaatctcattaccataaaaacatagtggattacaagcttaactag 62  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  27073395 gtaatctcattaccataaaaacaca--ggattacaagcttaactag 27073352  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 27064541 - 27064512
Alignment:
Q  325 aaccttaaaatccaacaaattcatatgaat 354  Q
    ||||||||||||||||||||||||||||||    
T  27064541 aaccttaaaatccaacaaattcatatgaat 27064512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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