View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_2 (Length: 697)
Name: NF10841_low_2
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 654
Target Start/End: Original strand, 24941369 - 24941999
Alignment:
| Q |
19 |
catcacgatcattatattatctctatcaactttcactctgaaattattacatgtcatgtattggtgtatttgtgtttatattcttaatcttaatactttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24941369 |
catcacgatcattatattatctctatcaactttcactctgaaatta---catgtcatgtattggtgtatttgtgtttatattcttaatcttaatactttg |
24941465 |
T |
|
| Q |
119 |
agaattaagataggattgacggcgtaacttgtcggcagcttgacttccatttagatatatagatgaaatttggaaaaggaaaaaattgttatattgcttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24941466 |
agaattaagataggattgacggcgtaacttgttggcagcttgacttccatttagatatatagatgaaatttggaaaagaaaaaaattgttatattgcttt |
24941565 |
T |
|
| Q |
219 |
nnnnnnnntgagaattgtgatgatcaattgtgaagtgccaagtatctaccgttgttaacgcttatatggtcgtgcccatgttatcataacaggccaaatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
24941566 |
aaaaaaaatgagaattgtgatgatcaattgtgaagtgccaagtatctaccgttgttaacgcttatatggtcgtgctcatgttatcataacagaccaaatt |
24941665 |
T |
|
| Q |
319 |
tggnnnnnnngccaggacaatgtagttctagaagtaattttctaatccaacatgattcagacactaaattaagtactccacgatattcatcctacgttcc |
418 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
24941666 |
tggtttttttgcccggacaatgtagttctaaaagtaattttctattccaacatgattcagacactaaattaagtactccacgatattcgtcctacgtgcc |
24941765 |
T |
|
| Q |
419 |
agaccgagataaggtgtgatgccttttcgcaaactacgagatcaaattatgattaggtataaacaataaccaaaaatagaccttctgatgtctggacatc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
24941766 |
agaccgagataaggtgtgatgccttttcgcaaactacgagatcaaattatgattaggtataaacaataacc--aaatagaccttttgatgtctggacatc |
24941863 |
T |
|
| Q |
519 |
caccccagtctgaatcattctaaaagataaacttattgatggaggaaggatacatgtgcaggctgggatcaataatgccctgaatatagtgaatgatgcg |
618 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24941864 |
caccccagtctgaatcattgtaaaagataagcttattgatggaggaaggatacacgtgaaggctgggatcaataatgccctgaatatagtgaatgacgcg |
24941963 |
T |
|
| Q |
619 |
cttcaatgccgacatatgttgtatttttggattacg |
654 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24941964 |
cttcaatgccgacatatgttgtgtttttggattacg |
24941999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 5417078 - 5417135
Alignment:
| Q |
332 |
aggacaatgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
389 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||||||||||| |||||| |||| |
|
|
| T |
5417078 |
aggacaatgtagttctgaaagttagtttctaatccaacatgattcaaacactacatta |
5417135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 875534 - 875584
Alignment:
| Q |
339 |
tgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
389 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
875534 |
tgtagttctaaaagtagatttcaaatccaacatgattcagacactacatta |
875584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University