View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_20 (Length: 394)
Name: NF10841_low_20
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 46943918 - 46944283
Alignment:
| Q |
11 |
cagagatatctaattaaattcactgatgtgtatgatttcaatgaaaaagaatgaaagnnnnnnngaagcatattgtgtgatacaaagtggaaggaagcag |
110 |
Q |
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| T |
46943918 |
cagagatatctaattaaattcactgatgtgtatgatttcaatgaaaaagaatgaaagaaaaaaagaagcatattgtgtgatacaaagtggaaggaagcag |
46944017 |
T |
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| Q |
111 |
gcatgttgttagagaaggctgccttatttagaccccacaaagagaaaacaagataaaagaaagaaagtaacaaacagctttatgggaagtgtggatgagg |
210 |
Q |
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| T |
46944018 |
gcatgttgttagagaaggctgccttatttagaccccacaaagagaaaacaagataaaagaaagaaagtaacaaacagctttatgggaagtgtggatgagg |
46944117 |
T |
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| Q |
211 |
ttctgtatcattgattttgaaatcaagtaaaattctcttttccttcttcatttttacaacaatattttgtttgtttacataatattaattacatgtacat |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
46944118 |
ttctatatcattgattttgaaatcaagtaaaattctcttttccttcttcatttttaaaacaatat----tttgtttacataatattaattacatgtacat |
46944213 |
T |
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| Q |
311 |
tttatatacaaacgtgtttgtttatgtatatgtgtgtaaatctttatacacacacataatagcaaaaagt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46944214 |
tttatatacaaacgtgtttgtttatgtatatgtgtgtaaatctttatacacacacataatagcaaaaagt |
46944283 |
T |
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