View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_22 (Length: 382)
Name: NF10841_low_22
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 369
Target Start/End: Original strand, 32224362 - 32224727
Alignment:
| Q |
2 |
tattaaaaggatagaaattgtgtatcttgagttgatggtcaatcgatgccttttataaacattggttagtaatcgttggacaatgataaggggttgttat |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| || ||| | |||||||||| || |||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
32224362 |
tattaaaaagatagaaattgtgtatcttgagttgatggttaaacgacgtcttttataaatatcggttagtagtcgttggacaatgatgagggattgttat |
32224461 |
T |
|
| Q |
102 |
catcaatgtcgagttgacatctcttatgagccgttgagatgttacaaggtaaaaaatctcaagctagtcgttgaatgtttactagaagaagacgatccaa |
201 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32224462 |
tatcaatgtcgagctgacatctgttatgagccgttgagatgttacaaagtgaaaaatctcaagctagtcgttggatgtttactagaagaagacgatccaa |
32224561 |
T |
|
| Q |
202 |
tcaaatgcttcggatttcaatcgaatagtatgtttgatcctgagcatatttaagacgatccaatccaatggtccgaggttcaatttttgttattgattta |
301 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
32224562 |
tccaatgcttcggatttcaatcgaatagtatgtttaatcctgagcacatttaagacgatccaatccaatgatccgatgttcaatttttgttattgaatt- |
32224660 |
T |
|
| Q |
302 |
agggcaaggattaaagccccctagacatgttacttataattaaggaaacattattttatgttcttttt |
369 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32224661 |
agggcaaggattaaag-cccctagacatgttacttataattaaggaaacattattttatgttcgtttt |
32224727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University