View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_24 (Length: 374)
Name: NF10841_low_24
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 30012728 - 30013075
Alignment:
| Q |
19 |
aacatgcagaggtatagtaatctaaagtcaactgaatatgatagataaaatcggac-atgattgttctagtaatgatttaaacttgggttacac--acaa |
115 |
Q |
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| T |
30012728 |
aacatgcaaaggtatagtaatctaaagtcaactgaatatgatagataaaatcggacgatgattgttccataaatgatttaaacttgggttacacacacaa |
30012827 |
T |
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| Q |
116 |
atttggttaattaaccatcgaaacaaaacctttgctaaagatgttgaagacaagaaaaagggacaaaacaattgagaaaacaagactaaagagatgctct |
215 |
Q |
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| T |
30012828 |
atttggttaattaaccattgaaacaaaacctttgctaaagatgttgaagacaagaaaaagggacaaaacaattgagaaaacaagactaaagagatgctct |
30012927 |
T |
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| Q |
216 |
atttaaagaaaacaaaacataaacatattaattgaaagtagttgnnnnnnnngagttattacctctcttggccggcagtgtcccatatttgtgctttgat |
315 |
Q |
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| T |
30012928 |
atttaaagaaaacaaaacataaacatattaattgaaagtagttg-aaaaaaagagttattacctctcttggccggcagtgtcccatatttgtgctttgat |
30013026 |
T |
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| Q |
316 |
gagcttatctctaaccttgatgttcttataaccaaattccacacctatg |
364 |
Q |
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| T |
30013027 |
gagcttatctctaaccttgatgttcttataaccaaattccacacctatg |
30013075 |
T |
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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 45233664 - 45233752
Alignment:
| Q |
276 |
acctctcttggccggcagtgtcccatatttgtgctttgatgagcttatctctaaccttgatgttcttataaccaaattccacacctatg |
364 |
Q |
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| T |
45233664 |
acctttcttggccggcagtgtcccatatttgagctttgatgagtttatctctgaccttgatgtttctgtaagcaaattcaactcctatg |
45233752 |
T |
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