View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_27 (Length: 366)
Name: NF10841_low_27
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_27 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 49247454 - 49247644
Alignment:
| Q |
17 |
aatatatactattagtttctggtatggaaaacttgaggtaatattttatagtccttatgccattagacttgcagtaggaaactatgggcagaaaagctag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49247454 |
aatatatactattagtttctggtatggaaaacttgaggtaatattttatagtccttatgccattagacttgcagtaggaaactatgggcagaaaagctag |
49247553 |
T |
|
| Q |
117 |
agatatgatatcttccatgattttcttatttgagaggacaacaaaattaaaatattgtacaaaattctatattggaatctaataatttgat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49247554 |
agatatgatatcttccatgattttcttatttgagaggacaacaaaattaaaatattgtacaaaattctatattggaatctaataatttgat |
49247644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 207 - 356
Target Start/End: Original strand, 31698245 - 31698394
Alignment:
| Q |
207 |
tgggaaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaa |
306 |
Q |
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|||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
31698245 |
tgggaaatgtttcatagacataccattttctacacctctcttatacacatgcccatgtggatggcaattttgtagtgttgttaaaaagttaagggtaaaa |
31698344 |
T |
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| Q |
307 |
atgatatttcacgtgcccctttcttctaacattcccatctttcttctctg |
356 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31698345 |
atgagatttcacgtgcccctttcttctaacattctcatctttcttctctg |
31698394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 230 - 356
Target Start/End: Complemental strand, 8726251 - 8726126
Alignment:
| Q |
230 |
cctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttcacgtgcccctttc |
329 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8726251 |
ccttttctacacctct-ttatacacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaatgagatttcacgtgcccctttc |
8726153 |
T |
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| Q |
330 |
ttctaacattcccatctttcttctctg |
356 |
Q |
| |
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||||||||||| ||||| ||||||||| |
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| T |
8726152 |
ttctaacattctcatctctcttctctg |
8726126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 42838094 - 42838206
Alignment:
| Q |
211 |
aaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatga |
310 |
Q |
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||||| || |||||||||| |||| | ||| ||||||||||| |||||||||||||| || |||||| | ||||||||||| | |||||||| ||| |
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| T |
42838094 |
aaatgattcatagacacactttttcttgtacccctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattga |
42838193 |
T |
|
| Q |
311 |
tatttcacgtgcc |
323 |
Q |
| |
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|||||||||||| |
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| T |
42838194 |
gatttcacgtgcc |
42838206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 34279680 - 34279533
Alignment:
| Q |
208 |
gggaaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaa |
307 |
Q |
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|||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34279680 |
gggaaatgattcatagacacacccttttctacacctcttttatacacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaa |
34279581 |
T |
|
| Q |
308 |
tgatatttcacgtgcccctttcttctaacattcccatctttcttctct |
355 |
Q |
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||| ||||||| ||||||| ||||||||||| | ||||| |||||||| |
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| T |
34279580 |
tgagatttcacatgcccctctcttctaacatactcatctctcttctct |
34279533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 7237843 - 7237770
Alignment:
| Q |
244 |
ctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttca |
317 |
Q |
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||||||||||| |||||||||||||| || |||||| | ||||||||||| | |||||||| ||| |||||| |
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| T |
7237843 |
ctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttca |
7237770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 41295 - 41366
Alignment:
| Q |
239 |
cacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatga |
310 |
Q |
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|||||||||| |||||||||||||||||||| || || |||| |||||||||||||| | |||||||||||| |
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| T |
41295 |
cacctctcttgtacacatgcccatgtggatggcagttatgtaatattgttaaaaagtcaggggtaaaaatga |
41366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 25352509 - 25352409
Alignment:
| Q |
240 |
acctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttcacgtgcccctttcttctaacatt |
339 |
Q |
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||||||||| |||||||| | ||||||||| | ||||||| |||||||||||| | | |||||||||||| ||||||| | || |||||||||||||| |
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| T |
25352509 |
acctctcttgtacacatgtctatgtggatggtagttttgtaatattgttaaaaaatcaggggtaaaaatgagatttcacattaccatttcttctaacatt |
25352410 |
T |
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| Q |
340 |
c |
340 |
Q |
| |
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| |
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| T |
25352409 |
c |
25352409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 22501846 - 22501958
Alignment:
| Q |
211 |
aaatgttttatagacacaccctttcctacacctctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatga |
310 |
Q |
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||||| || |||||||||| |||| | ||| ||||||||||| |||||||||||||| || |||||| | ||||||||||| | |||||||| ||| |
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| T |
22501846 |
aaatgattcatagacacactttttcttgtacccctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattga |
22501945 |
T |
|
| Q |
311 |
tatttcacgtgcc |
323 |
Q |
| |
|
|||||||||||| |
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|
| T |
22501946 |
gatttcacgtgcc |
22501958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 24768348 - 24768427
Alignment:
| Q |
244 |
ctcttatacacatgcccatgtggatgacaattttgtagtattgttaaaaagttaagggtaaaaatgatatttcacgtgcc |
323 |
Q |
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||||||||||| |||||||||||||| || |||||| | ||||||||||| | ||||||| ||| |||||||||||| |
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| T |
24768348 |
ctcttatacacctgcccatgtggatggcagctttgtaattttgttaaaaaggaagaggtaaaattgagatttcacgtgcc |
24768427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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