View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_28 (Length: 365)
Name: NF10841_low_28
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 38582231 - 38582595
Alignment:
| Q |
1 |
tagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagnnnnnnntgatgacttgttggatacaatggattacacacct |
100 |
Q |
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| T |
38582231 |
tagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagaaaaaaatgatgacttgttggatacaatggattacacacct |
38582330 |
T |
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| Q |
101 |
gcctcaaagaatccaccaatccataattaaagtctcctagttttannnnnnnnnnctttccttagaggacaatttttggtaggnnnnnnnngcaccaatc |
200 |
Q |
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| T |
38582331 |
gcctcaaagaatccaccaatccataattaaagtctcctagttttatttattttttctttccttagaggacaatttttggtaggaaacaaaagcaccaatc |
38582430 |
T |
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| Q |
201 |
cacagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatccacacttaaatcacagatttt |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582431 |
cagagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatccacacttaaatcacagatttt |
38582530 |
T |
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| Q |
301 |
tgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatcacttgtaaat |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582531 |
tgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatcacttgtaaat |
38582595 |
T |
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