View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_29 (Length: 365)
Name: NF10841_low_29
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 71 - 339
Target Start/End: Complemental strand, 16627884 - 16627616
Alignment:
| Q |
71 |
atgtagtaaaagtaacaatatacataaattttaaacaaaacgaggataataaaaaattcagttagtggaattcacaattcagctcagcttattttgttgc |
170 |
Q |
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| T |
16627884 |
atgtagtaaaagtaacaatatacataaattttaaacaaaacgaggataataaaaaattcagttagtggaattcacaattcagctcagcttattttgttgc |
16627785 |
T |
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| Q |
171 |
acataaaatcttgtcatagatccattttctgatgtgacatcatcgtctttgttttatgcatattaatttttgtcatgcaacttcctttgtctctttcaca |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16627784 |
acataaaatcttgtcatagatccattttctgatgtgacatcatcgtctttgttttatgcatattaatttttgtcatgcaacttcctttgtctctttcaca |
16627685 |
T |
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| Q |
271 |
tttatttcttttgttattttcaccaaaatataataaatacgcaaaaatagaatgatatgatagaagtct |
339 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16627684 |
tttatttcttttattattttcacctaaatataataaatacgcaaaaatagaatgatatgacagaagtct |
16627616 |
T |
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