View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_3 (Length: 593)
Name: NF10841_low_3
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 114 - 414
Target Start/End: Complemental strand, 43224994 - 43224681
Alignment:
| Q |
114 |
gatgttaaaatgaatatcttagatgcatgtatttagaacaacattatgtaaaggaagttgaatatgattaagagagatgctatatgcagcgaattctttt |
213 |
Q |
| |
|
|||| ||| |||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
43224994 |
gatgataagatgaatgtcatagatgcatgtatttagaacatcattatgtaaagtaagttgaatatgataaagagagctgctatatgcagcgaattctttt |
43224895 |
T |
|
| Q |
214 |
ctgtcgaaatttcgacaaggcgttgtggaagggtcaactaggagtgagatggcaaaacagattgatttattctaattctggattcacggaatac---atg |
310 |
Q |
| |
|
| ||||||||| ||||||||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43224894 |
ttcccgaaatttccacaaggcgttgtgttagcgttaaataggagtgccatggcaaaacagattgatttattctaattctggattcacggaatacataata |
43224795 |
T |
|
| Q |
311 |
atggtagtggtcttatgttacaaaaacaattgttgg----------tgaaaaagattttcactataactagcattattgtatgataaatatctattgacc |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224794 |
atggcagtggtcttatgttacaaaaacaattgttcgtgatccttcttgaaaaagattttcgctataactagcattattgtatgataaatatctattgacc |
43224695 |
T |
|
| Q |
401 |
acatggttgtctct |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43224694 |
acatggttgtctct |
43224681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 471 - 578
Target Start/End: Complemental strand, 43224685 - 43224578
Alignment:
| Q |
471 |
tctctcaaaagtcaattcaaacatcctccnnnnnnnnn-gtcaattcaagcatgcatttatttttgttctaaattattattactataaaataatactacc |
569 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43224685 |
tctctcaaaagtcaattcaaacatcctccaagaaaaaaagtcaattcaagcttgcatttatttttgttctaaattattattactataaaataatacta-c |
43224587 |
T |
|
| Q |
570 |
tattaattt |
578 |
Q |
| |
|
||||||||| |
|
|
| T |
43224586 |
tattaattt |
43224578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 473 - 559
Target Start/End: Original strand, 41654252 - 41654337
Alignment:
| Q |
473 |
tctcaaaagtcaattcaaacatcctccnnnnnnnnngtcaattcaagcatgcatttatttttgttctaaattattattactataaaa |
559 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41654252 |
tctcaaaagtcaattcaaacatcctccaaaaaaaa-gtcaattcaagcatgcatttatttttgttccaaattattattactataaaa |
41654337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 41654185 - 41654234
Alignment:
| Q |
380 |
tatgataaatatctattgaccacatggttgtctctaataattgaatgcgc |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654185 |
tatgataaatatctattgaccacatggttgtctctaataattgaatgcgc |
41654234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 31608446 - 31608384
Alignment:
| Q |
275 |
ttgatttattctaattctgga-ttcacggaatacatgatggtagtggtcttatgttacaaaaa |
336 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
31608446 |
ttgatttattctaatttcggaattcacggaatacatggtggcagtggtgttatgttacaaaaa |
31608384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 34344888 - 34344808
Alignment:
| Q |
270 |
acagattgatttattctaatt-ctggattcacggaatacatgatggtagtggtcttatgttacaaaaacaattgttggtga |
349 |
Q |
| |
|
|||| |||||||||||||||| | | ||||||| |||||||||||| | | || |||||||||||||| || |||| |||| |
|
|
| T |
34344888 |
acagtttgatttattctaatttcagaattcacgaaatacatgatggcacttgtgttatgttacaaaaataactgttcgtga |
34344808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University