View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_30 (Length: 362)
Name: NF10841_low_30
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 42875895 - 42875559
Alignment:
| Q |
11 |
caaaggatcttgtgaattggacaccattggatcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttcc |
110 |
Q |
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| T |
42875895 |
caaaggatcttgtgaattggacaccattggatcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttcc |
42875796 |
T |
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| Q |
111 |
aggtggcaaaccagcaattttgtacacaggaattgatccaaataatcatcaagttcaaaacatagccatacccaaaaatatgtctgacccattacttaga |
210 |
Q |
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| T |
42875795 |
aggtggcaaaccagcaattttatacacaggaattgatccaaataatcatcaagttcaaaacatagccatacccaaaaatatgtctgacccattacttaga |
42875696 |
T |
|
| Q |
211 |
gaatggaaaaaatcaccaaaaaatccattgatggaacctactgttgctaacaaaataaatgcaagttcatttagggacccaactacttcttggttaggaa |
310 |
Q |
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| T |
42875695 |
gaatggaaaaaatcaccaaaaaatccattgatggaacctactgttgctaacaaaattaatgcaagttcatttagggacccaactacttcttggctaggaa |
42875596 |
T |
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| Q |
311 |
aagatggttattggagggtattaattggaagcaaagt |
347 |
Q |
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| T |
42875595 |
aagatggttattggagggtattaattggaagcaaagt |
42875559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 55 - 345
Target Start/End: Original strand, 5902486 - 5902776
Alignment:
| Q |
55 |
ccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaata |
154 |
Q |
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| T |
5902486 |
ccatctcaaccgtccgatataaatggttgttggtcaggatcagccacaatacttcatggtaacaaaccagctattttatacactggaattgacccaatga |
5902585 |
T |
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| Q |
155 |
atcatcaagttcaaaacatagccataccc-aaaaatatgtctgacccattacttagagaatggaaaaaatcaccaaaaaatccattgatggaacctactg |
253 |
Q |
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| T |
5902586 |
atcaccaagttcaaaatatag-cataccctaaaaatttatccgacccttttctaagggaatggattaagtcaccaaaaaatccattaatggaaccaacta |
5902684 |
T |
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| Q |
254 |
ttgctaacaaaataaatgcaagttcatttagggacccaactacttcttggttaggaaaagatggttattggagggtattaattggaagcaaa |
345 |
Q |
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| T |
5902685 |
gtgaaaataaaattaatgcaagttcatttagagatccaactagtggttggttaggaaaagatggaaattggaggataattattggtagcaaa |
5902776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 4118525 - 4118457
Alignment:
| Q |
80 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatc |
148 |
Q |
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| T |
4118525 |
gttgttggtcaggttcagcaactatactcccaggtgaaaaacctgctattttgtacacaggaattgatc |
4118457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 4129717 - 4129600
Alignment:
| Q |
80 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaataatcatcaagttcaaaacatagccat |
179 |
Q |
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| T |
4129717 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaatttagccat |
4129618 |
T |
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| Q |
180 |
acccaaaaatatgtctga |
197 |
Q |
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| T |
4129617 |
gccaaagaatctgtctga |
4129600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 4138433 - 4138316
Alignment:
| Q |
80 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaataatcatcaagttcaaaacatagccat |
179 |
Q |
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||||||||||||| ||||| || ||||| ||||||| ||||| || || ||||| ||||||||||||| ||||| || ||||||||||| ||||||| |
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| T |
4138433 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaatttagccat |
4138334 |
T |
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| Q |
180 |
acccaaaaatatgtctga |
197 |
Q |
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| T |
4138333 |
gccaaagaatctgtctga |
4138316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 27991216 - 27991162
Alignment:
| Q |
173 |
tagccatacccaaaaatatgtctgacccattacttagagaatggaaaaaatcacc |
227 |
Q |
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| T |
27991216 |
tagctatacccaaaaatgtgtctgacccatttcttagggaatggataaaatcacc |
27991162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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