View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_31 (Length: 360)
Name: NF10841_low_31
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 33657172 - 33657518
Alignment:
| Q |
18 |
gttatccatgcttgtctagctcttgccactatatatata--aaccaagctcaacaaaaacatatcattcattcattgacttgaaccatatagcacattcc |
115 |
Q |
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| T |
33657172 |
gttatccattcttgtctagctcttgccactatatatatataaaccaagctcaacaaaaacatatcattcattcattgacttgaaccatttagcacattcc |
33657271 |
T |
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| Q |
116 |
atatccatccatcatatttcatcattatttctcgttctac-------gtgctatggatattattgcaattttattttacaccttcctctttctcttaatt |
208 |
Q |
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| T |
33657272 |
atatccatccatcatatttcatcattatttctcgttctacctcgagagtactatggatattattgcaattttattttacaccttcctctttctcttaatt |
33657371 |
T |
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| Q |
209 |
accctcctcttgtatccattcctaatgaaacacaataaaaacaaagccacgtccaagcctaaggttcccccaggttcaatgggttggccatatataggag |
308 |
Q |
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| T |
33657372 |
accctcctcttgtatccattcataatgaaacacaataaacacagagccacgtccaagcctaaggttcccccaggttcaatgggttggccatatataggag |
33657471 |
T |
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| Q |
309 |
aaactcttcaactttactctcaacaccctaacaccttctctgcttct |
355 |
Q |
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| T |
33657472 |
aaactcttcaactttactctcaacatcctaacaccttctttgcttct |
33657518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 33698161 - 33698243
Alignment:
| Q |
273 |
ttcccccaggttcaatgggttggccatatataggagaaactcttcaactttactctcaacaccctaacaccttctctgcttct |
355 |
Q |
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| T |
33698161 |
ttcccccaggttcattgggttggccttatataggagaaacttttcaactctactctcaacaccctaacatcttctttgcttct |
33698243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 10422678 - 10422736
Alignment:
| Q |
281 |
ggttcaatgggttggccatatataggagaaactcttcaactttactctcaacaccctaa |
339 |
Q |
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||||||||||||||||| || |||||||||||| |||||||||| |||||| ||||||| |
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| T |
10422678 |
ggttcaatgggttggccttacataggagaaacttttcaactttattctcaagaccctaa |
10422736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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