View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_33 (Length: 359)
Name: NF10841_low_33
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 3659514 - 3659840
Alignment:
| Q |
1 |
aagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
100 |
Q |
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| T |
3659514 |
aagccttacatgaatataatgtaatgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
3659613 |
T |
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| Q |
101 |
agagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcact |
200 |
Q |
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| T |
3659614 |
agagaacagaatcttctcttggtgtgc---------------cactatatctccgtcatcgctactacgtgttgatcctccactgtcccccaccagcact |
3659698 |
T |
|
| Q |
201 |
tcctcgtcatcttcaacaccctgataagagtccacaacatctacaactgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttc |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659699 |
tcctcgtcatcttcaacaccctgagaagagtccacaacatctacaactgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttc |
3659798 |
T |
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| Q |
301 |
catctgattcacaagttcttgtgctataaacctcacaaacat |
342 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3659799 |
catccgattcacaagttcttgtgctataaacctcacaaacat |
3659840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 3653251 - 3653449
Alignment:
| Q |
4 |
ccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcaga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
3653251 |
ccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgcctttactcttcaaatcagttctgctttccattttaagcggcagtggagcaga |
3653350 |
T |
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| Q |
104 |
gaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
202 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3653351 |
gaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
| Q |
42 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
141 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
|
| Q |
142 |
tcactatatctccgtcatcgctactacgtgttgatcctccac |
183 |
Q |
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| T |
3649281 |
tcactcaatctccataaccactactacgcgttgatcctccac |
3649322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 3657323 - 3657452
Alignment:
| Q |
73 |
tgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgt |
172 |
Q |
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|||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | |||||||||||||||| | |||||| | | | || ||||| || |
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| T |
3657323 |
tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcaatctccataaccactgctacgcgt |
3657422 |
T |
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| Q |
173 |
tgatcctccactgtcctccaccagcacttc |
202 |
Q |
| |
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||||||| ||| |||||||||||||||||| |
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| T |
3657423 |
tgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
42 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
100 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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