View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_36 (Length: 351)
Name: NF10841_low_36
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 24689997 - 24689804
Alignment:
| Q |
23 |
gatgcatttgaaattacctcaagttaaaactgatgtcctacattaattaaatgcagttgttaaaagatgaaccatgtccttaaacacacagaaaatttat |
122 |
Q |
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| T |
24689997 |
gatgcatctgaaataaccttaagttaaaactgatgtcctacattaattaaatgcatttgttaaaagatgaaccatgtccttaaacacacagaaaatttat |
24689898 |
T |
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| Q |
123 |
cattaagtatatccttggcctctttaacaatatgtaaaatggtaaactgcattatggtaacaatagaatggtcctttta--aaatgagctaatt |
214 |
Q |
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| T |
24689897 |
cattaagtatatccttggcctctttaacaatatgtaaaatggtaaactgcattatggtaacaatagaatggtccttttaacaaatgagctaatt |
24689804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 24689502 - 24689401
Alignment:
| Q |
238 |
tcacacaaatagaatatgaaaagggtaagtaaagaagaggccaatacctcaaattttatgaatcaaatggtctctaatgtgcatagtctcatttcctttc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24689502 |
tcacacaaatagaatatgaaaagggtaagtaaagaagaggccaatacctcaaattttatgaatcaaatggtctctaatgtgcatagtctcatttcctttc |
24689403 |
T |
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| Q |
338 |
tc |
339 |
Q |
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|| |
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| T |
24689402 |
tc |
24689401 |
T |
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