View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_37 (Length: 349)
Name: NF10841_low_37
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_37 |
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| [»] scaffold0174 (1 HSPs) |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 80 - 341
Target Start/End: Complemental strand, 23460171 - 23459910
Alignment:
| Q |
80 |
cagtgtcattgttcttgatcattgaaggtagcaatttcgctttcttctaacaccttctgcttcgtcactaaatgaattgtcggtcttcttcctctttttc |
179 |
Q |
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| T |
23460171 |
cagtgtcaatgttcttgatcattgaagatagcaatgctgctttcttctaacatcttctgcttcgtcattaaatgaattgtcggtcttcttcctctttttc |
23460072 |
T |
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| Q |
180 |
tccctattgcagtagctactcgagtttcacgattttgagtcataagaaagaaagataagaagaataataatggttctgttaagggtcttttctttttaaa |
279 |
Q |
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| T |
23460071 |
tccctattgcagtagctacttgagtttcatgattttgagtcataagaaataaagataagaagaataataatggttctgttaatggtctttcctttttaaa |
23459972 |
T |
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| Q |
280 |
tgatacagatcaaagatcttgattttcccaaaaaataatatagtgtttgtagtctctctgct |
341 |
Q |
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| T |
23459971 |
tgatacagatcaaagatcttggttttcccacaaaataatatagtgtttgtaatctctctgct |
23459910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 306
Target Start/End: Complemental strand, 23497275 - 23497020
Alignment:
| Q |
39 |
tttcataattttgtgtatagatccctattcattttcctcagcagtgtcattgttcttgatcattgaaggtagcaatttcgctttcttctaacaccttctg |
138 |
Q |
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| T |
23497275 |
tttcataattttgtgtatagatctctatttattttcctcagcaatgtcattg-------------aagctagcaataccactttcttcaaacttcttctg |
23497189 |
T |
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| Q |
139 |
cttcgtcactaaatgaattgtcggtcttcttcctctttttctccctattgcagta--gctactcgagtttcacgattttgagtcataaga-aagaaagat |
235 |
Q |
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| T |
23497188 |
cttcatcactaaatgaatcgtctttcttcttcct--ttttctccctattgcagtatagctactcaagtttcatgattttgtgtcaaaaaagaagaaagac |
23497091 |
T |
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| Q |
236 |
aagaagaataataatggttctgttaagggtcttttctttttaaatgatacagatcaaagatcttgattttc |
306 |
Q |
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| T |
23497090 |
aagaagaatgataatggttctgttgatggtctttcctttttaaatgatacagatcaaagatcttggttttc |
23497020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 23460832 - 23460762
Alignment:
| Q |
15 |
tcagctataaccaggtttgcagcgtttcataattttgtgtatagatccctattcattttcctcagcagtgt |
85 |
Q |
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| T |
23460832 |
tcagctataaccaggtttgcagcgtttcataattttgtgtaaagatccccattcattttccttagcagtgt |
23460762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 22956 - 22863
Alignment:
| Q |
149 |
aaatgaattgtcggtcttcttcctctttttctccctattgcagtagctactcgagtttcacgattttgagtcataagaaagaaagataagaagaat |
244 |
Q |
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| T |
22956 |
aaatgaattgtcaatcttcttcctcgtt--ctccgtgttgcagtagccactcgattttcatgattttgagtcataagaaagaaagataagaagaat |
22863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 8232 - 8158
Alignment:
| Q |
177 |
ttctccctattgcagtagctac----tcgagtttcacgattttgagtcataagaaagaaagataagaagaataat |
247 |
Q |
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| T |
8232 |
ttctccctatcgcagtagctacgtactcgagtttcatggttttttgtcataagatagaaagataagaagaataat |
8158 |
T |
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