View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_4 (Length: 565)

Name: NF10841_low_4
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_4
NF10841_low_4
[»] chr5 (10 HSPs)
chr5 (1-548)||(41547942-41548489)
chr5 (196-287)||(41509652-41509743)
chr5 (445-544)||(41547862-41547961)
chr5 (196-287)||(41519878-41519969)
chr5 (445-532)||(41547790-41547877)
chr5 (192-287)||(41515637-41515732)
chr5 (199-306)||(41524548-41524655)
chr5 (231-306)||(41469895-41469970)
chr5 (470-548)||(41509436-41509514)
chr5 (102-186)||(41509765-41509849)
[»] chr7 (3 HSPs)
chr7 (192-251)||(16638334-16638393)
chr7 (192-251)||(17457245-17457304)
chr7 (192-251)||(17595910-17595969)


Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 41548489 - 41547942
Alignment:
Q  1 aagttggagcatttcctatgacaactcttgacttagaaggaatgactatcccagatcttgttcaagtattgcttggatctttacagatggaaacttatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41548489 aagttggagcatttcctatgacaactcttgacttagaaggaatgactatcccagatcttgttcaagtattgcttggatctttacagatggaaacttatga 41548390  T
Q  101 aagagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagacaacaacttcaaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41548389 aagagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagacaacaacttcaaatg 41548290  T
Q  201 gagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41548289 gagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttga 41548190  T
Q  301 aggaagccaagacggctgaaaaaactcataataagttgaaacaagaaagtaaggaaactattgaatttctaagaaagagaaacgttgggttgaagtgtga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41548189 aggaagccaagacggctgaaaaaactcataataagttgaaacaagaaagtaaggaaactattgaatttctaagaaagagaaacgttgggttgaagtgtga 41548090  T
Q  401 ggttgacaggttgaacgnnnnnnngatggaggaagaccatgaacttgaagtgttgagacaaaagaatggtgagttggagtgtgaggttaataagttggaa 500  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41548089 ggttgacaggttgaacgaaaaaaagatggaggaagaccatgaacttgaagtgttgagacaaaagaatggtgagttggagtgtgaggttaataaattggaa 41547990  T
Q  501 gaagaaagggtggaggatgggaacaaatttgatgtgttgagaaaaaag 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547989 gaagaaagggtggaggatgggaacaaatttgatgtgttgagaaaaaag 41547942  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 41509743 - 41509652
Alignment:
Q  196 aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat 287  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||    
T  41509743 aaatggagaaacttgcaaggataaaggctgaggaagagttaaagaaaagagaggaaatttttcagaaagggaagaaagtacaagaacgttat 41509652  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 445 - 544
Target Start/End: Complemental strand, 41547961 - 41547862
Alignment:
Q  445 ttgaagtgttgagacaaaagaatggtgagttggagtgtgaggttaataagttggaagaagaaagggtggaggatgggaacaaatttgatgtgttgagaaa 544  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||||| |||| | ||||| | ||||||| |||||||||||||||| ||||| |||||    
T  41547961 ttgatgtgttgagaaaaaagaatgatgagttggagtgtgaggttaataggttgaaggaagatatggtggagtatgggaacaaatttgaagtgttaagaaa 41547862  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 41519969 - 41519878
Alignment:
Q  196 aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat 287  Q
    |||||||||||||  ||||| || |||| ||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||| |||||    
T  41519969 aaatggagaaacttgcaaggatacaggccgaggaagagtttaagaaaagagaggaactttgtcagaaagggaagaaagtacaagaacgttat 41519878  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 445 - 532
Target Start/End: Complemental strand, 41547877 - 41547790
Alignment:
Q  445 ttgaagtgttgagacaaaagaatggtgagttggagtgtgaggttaataagttggaagaagaaagggtggaggatgggaacaaatttga 532  Q
    |||||||||| ||| | |||| || |||| | ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||    
T  41547877 ttgaagtgttaagaaagaagagtgatgagctagagtgtgaggttaataatttgaaggaagatagggtggaggatgggaacaaatttga 41547790  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 41515732 - 41515637
Alignment:
Q  192 cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat 287  Q
    |||||| |||||||||||||||||||  | ||||||   ||||| ||||||||||| || |||||| |||||  ||||||||| ||||||||||||    
T  41515732 cttcaactggagaaactctcaaggttgtacgctgagtctgagtttaagaaaagagaagagatttgtgagaaagggaagaaagttcaagaaagttat 41515637  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 41524655 - 41524548
Alignment:
Q  199 tggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctctt 298  Q
    |||||||||||||||||||| | ||||||   ||||| ||||||||||| || |||||| | |||  ||||||||| |||||||||||| | ||||| ||    
T  41524655 tggagaaactctcaaggttatatgctgagtctgagtttaagaaaagagaagagatttgtgaaaaagggaagaaagttcaagaaagttatgaagctctttt 41524556  T
Q  299 gaaggaag 306  Q
    ||| ||||    
T  41524555 gaaagaag 41524548  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 41469970 - 41469895
Alignment:
Q  231 gagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaag 306  Q
    ||||| ||||||||||||||||||||| |||||   ||||||||| ||||||||||| | ||||| ||||| ||||    
T  41469970 gagtttaagaaaagagaggaaatttgtgagaaaggtaagaaagtaaaagaaagttatgaagctcttttgaaagaag 41469895  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 548
Target Start/End: Complemental strand, 41509514 - 41509436
Alignment:
Q  470 tgagttggagtgtgaggttaataagttggaagaagaaagggtggaggatgggaacaaatttgatgtgttgagaaaaaag 548  Q
    ||||||| ||||||| ||| | |||||| ||||| |||||||||||||||||||  || ||||| |||| |||||||||    
T  41509514 tgagttgaagtgtgaagttcagaagttgaaagaaaaaagggtggaggatgggaatgaacttgatatgttaagaaaaaag 41509436  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 41509849 - 41509765
Alignment:
Q  102 agagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagac 186  Q
    ||||||||||||||||||||||| || ||| | | ||||| |||||| | ||||| ||| ||  |||||||||| ||||| ||||    
T  41509849 agagttgaaggtgttttggtgagtagagatgttggactcagagaccaaactcaacgcttgcagcagaatgttgatatggagagac 41509765  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 16638334 - 16638393
Alignment:
Q  192 cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa 251  Q
    |||||||||||||||||  |||||||| | |||||| ||||||| |||||||||||||||    
T  16638334 cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa 16638393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 17457304 - 17457245
Alignment:
Q  192 cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa 251  Q
    |||||||||||||||||  |||||||| | |||||| ||||||| |||||||||||||||    
T  17457304 cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa 17457245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 17595910 - 17595969
Alignment:
Q  192 cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa 251  Q
    |||||||||||||||||  |||||||| | |||||| ||||||| |||||||||||||||    
T  17595910 cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa 17595969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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