View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_40 (Length: 338)
Name: NF10841_low_40
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 90 - 323
Target Start/End: Original strand, 31232049 - 31232282
Alignment:
| Q |
90 |
accttagtcttgacaacagctttagccttgggcttagggccgggcttggccttcactgccgtcaccttagcaactgcctttgtctttggcttagcggctg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31232049 |
accttagtcttgacaacagctttagccttgggcttagggccgggcttggccttcactgccgtcaccttagcaactgcctttgtctttggcttagcggctg |
31232148 |
T |
|
| Q |
190 |
caggctttttctccgctgatggtttcgtcgctggagaaagcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31232149 |
caggctttttctccgctgatggtttcgtcgccggagaaagcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatg |
31232248 |
T |
|
| Q |
290 |
aagcaatagcttcttgaaatttgaaggaagctgt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31232249 |
aagcaatagcttcttgaaatttgaaggaagctgt |
31232282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 31173513 - 31173418
Alignment:
| Q |
228 |
agcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatgaagcaatagcttcttgaaatttgaaggaagctgt |
323 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31173513 |
agcttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaagctgt |
31173418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 31226941 - 31227036
Alignment:
| Q |
228 |
agcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatgaagcaatagcttcttgaaatttgaaggaagctgt |
323 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31226941 |
agcttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaagctgt |
31227036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 31173589 - 31173542
Alignment:
| Q |
98 |
cttgacaacagctttagccttgggcttagggccgggcttggccttcac |
145 |
Q |
| |
|
||||||||||||||||||||| ||||||| | | |||||||||||||| |
|
|
| T |
31173589 |
cttgacaacagctttagcctttggcttagcggctggcttggccttcac |
31173542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 32798203 - 32798113
Alignment:
| Q |
230 |
cttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatgaagcaatagcttcttgaaatttgaaggaagctgt |
323 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||||||| | |||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
32798203 |
cttgaatgaacctttcaccttaacgagctttccagaagcaac---attcttcaaactctgaaacaataatttcttgaaatttgatggaagctgt |
32798113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University