View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_41 (Length: 330)
Name: NF10841_low_41
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 19937104 - 19936803
Alignment:
| Q |
19 |
cataaggtgttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19937104 |
cataaggtgttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaa |
19937005 |
T |
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| Q |
119 |
actctcccacatggttctttctgttgtgccttcaagtagtacaaggttccctgaatctaaaagcttcaaacttgaattggttgcaacattcggtgcgttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19937004 |
actctcccacatggttctttctgttgtgccttcaagtagtacaaggttccctgaatctaaaagcttcgaacttgaattggttgcaacattcggtgcgttg |
19936905 |
T |
|
| Q |
219 |
gatgtccaaatcacctctttctttccattcaataccacaagatcattgccatcatcagatattttaacaacaccagaagaatctttgagaggttggtctc |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19936904 |
gatgtccaaatcacctctttctttccgttcaataccacgagatcattaccattatcagatattttaacaacaccagaagaatctttgagaggttggtctc |
19936805 |
T |
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| Q |
319 |
tg |
320 |
Q |
| |
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|| |
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| T |
19936804 |
tg |
19936803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 19968243 - 19967942
Alignment:
| Q |
19 |
cataaggtgttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19968243 |
cataaggtgttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaa |
19968144 |
T |
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| Q |
119 |
actctcccacatggttctttctgttgtgccttcaagtagtacaaggttccctgaatctaaaagcttcaaacttgaattggttgcaacattcggtgcgttg |
218 |
Q |
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| T |
19968143 |
actctcccacatggttctttctgttgtgccttcaagtagtacaaggttccctgaatctaaaagcttcgaacttgaattggttgcaacattcggtgcgttg |
19968044 |
T |
|
| Q |
219 |
gatgtccaaatcacctctttctttccattcaataccacaagatcattgccatcatcagatattttaacaacaccagaagaatctttgagaggttggtctc |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19968043 |
gatgtccaaatcacctctttctttccgttcaataccacgagatcattaccattatcagatattttaacaacaccagaagaatctttgagaggttggtctc |
19967944 |
T |
|
| Q |
319 |
tg |
320 |
Q |
| |
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|| |
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|
| T |
19967943 |
tg |
19967942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 47602475 - 47602602
Alignment:
| Q |
139 |
ctgttgtgccttcaagtagtacaaggttccctgaatctaaaagcttcaaacttgaattggttgcaacattcggtgcgttggatgtccaaatcacctcttt |
238 |
Q |
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||||| ||| |||||||||||||||| || ||||| ||||||| || |||| ||||||||||||| |||||| || || |||| | |||||||||||| |
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| T |
47602475 |
ctgttctgcattcaagtagtacaaggctctctgaacctaaaagtttggaactcgaattggttgcaatattcggcgcttttgatgactaaatcacctcttc |
47602574 |
T |
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| Q |
239 |
ctttccattcaataccacaagatcattg |
266 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
47602575 |
ctttccattcagtaccacaagatcattg |
47602602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 20287330 - 20287273
Alignment:
| Q |
28 |
ttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcat |
85 |
Q |
| |
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||||||||||||| ||| |||||||||||||||| ||||||| || ||||||||||| |
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| T |
20287330 |
ttttccatgatgtgagttgtactttctcacctgttcttttgtttcttgtaagtttcat |
20287273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 20064503 - 20064560
Alignment:
| Q |
28 |
ttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcat |
85 |
Q |
| |
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||||||||||| || ||||| ||||||||||||| |||||||| ||| ||||||||| |
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| T |
20064503 |
ttttccatgatcttagttttgatttctcacctgttcttttgttgatagaaagtttcat |
20064560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 20301903 - 20301846
Alignment:
| Q |
28 |
ttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcat |
85 |
Q |
| |
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|||||||||||||| ||||| ||| ||||||||| |||||||| ||| ||||||||| |
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| T |
20301903 |
ttttccatgatgttagttttgatttttcacctgttcttttgttgatagaaagtttcat |
20301846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 40825808 - 40825866
Alignment:
| Q |
28 |
ttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcatg |
86 |
Q |
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||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |
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| T |
40825808 |
ttttccatgatgtgagttgtactttctcacctgttcttttgttgcttgtaagtttcatg |
40825866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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