View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_44 (Length: 322)

Name: NF10841_low_44
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_44
NF10841_low_44
[»] chr7 (27 HSPs)
chr7 (14-304)||(8585991-8586281)
chr7 (14-304)||(8616271-8616564)
chr7 (14-282)||(27831160-27831428)
chr7 (14-296)||(6789113-6789395)
chr7 (14-299)||(10494659-10494944)
chr7 (14-299)||(8658961-8659246)
chr7 (14-282)||(17267554-17267822)
chr7 (26-282)||(17259856-17260112)
chr7 (175-300)||(8545230-8545355)
chr7 (14-299)||(8654048-8654333)
chr7 (91-246)||(29582203-29582358)
chr7 (103-300)||(8667016-8667213)
chr7 (195-294)||(3146867-3146966)
chr7 (189-278)||(27846566-27846655)
chr7 (14-149)||(1301208-1301343)
chr7 (169-296)||(8575927-8576054)
chr7 (169-299)||(8646475-8646605)
chr7 (175-296)||(8581301-8581422)
chr7 (29-246)||(8601625-8601842)
chr7 (196-295)||(13333835-13333934)
chr7 (195-304)||(8537629-8537738)
chr7 (104-296)||(29578047-29578239)
chr7 (169-296)||(8609518-8609645)
chr7 (195-296)||(8590239-8590340)
chr7 (190-254)||(8636804-8636868)
chr7 (261-300)||(8558980-8559019)
chr7 (262-299)||(1301059-1301096)
[»] chr4 (3 HSPs)
chr4 (14-300)||(30774849-30775135)
chr4 (28-299)||(9336190-9336461)
chr4 (14-282)||(35132071-35132340)
[»] chr2 (10 HSPs)
chr2 (26-299)||(16662289-16662562)
chr2 (14-284)||(14703021-14703291)
chr2 (38-296)||(12245715-12245973)
chr2 (14-296)||(12258866-12259148)
chr2 (202-300)||(43625009-43625107)
chr2 (101-296)||(7541827-7542022)
chr2 (169-296)||(11999009-11999136)
chr2 (14-156)||(12234430-12234572)
chr2 (110-299)||(16657898-16658087)
chr2 (14-86)||(16657802-16657874)
[»] chr1 (5 HSPs)
chr1 (111-296)||(34467170-34467355)
chr1 (58-282)||(15594649-15594873)
chr1 (199-296)||(52549416-52549513)
chr1 (14-299)||(4678842-4679127)
chr1 (14-70)||(52549297-52549353)
[»] chr8 (2 HSPs)
chr8 (58-249)||(12528152-12528343)
chr8 (175-294)||(43744419-43744538)
[»] chr5 (1 HSPs)
chr5 (202-296)||(28219519-28219613)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 8585991 - 8586281
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | | ||||| ||||||||    
T  8585991 ttgaggaaatcaatatggacctttttaatgagtgtataaatactgttgagagttgtcttaccgattctaagatagagaagaatggtgtagacgatattgt 8586090  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8586091 ccttgtcggtggctcgtccagaattcccaaagtacaggaactattgagtgacttcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 8586190  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccctctgt 304  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8586191 gttgctagtggggctgcagttcaggcttctttgctgtgtaaagactttaagaaagttccaaacttggtgctgcgagatgttacccctctgt 8586281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 8616564 - 8616271
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  |||||||||||||||| ||||| ||||| ||||||||||||||| |||  ||||| ||||||||||||||||| ||||||||||||||    
T  8616564 ttgaggaaatcaatatggacctttttaacgagtgtataaagactgttgagagttgttttaatgattctaagatagagaagagtagtgtagatgatattgt 8616465  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
     |||||||| |||||||| || ||||| ||||||||||||||| |||| || || ||| ||||||| ||||| |||||||||||||||||||||||||||    
T  8616464 tcttgtcggtggctcgtctaggattcctaaagtgcaggaactattgagtgactttttcgatgggaaggatttgtgcaagaacatcaatcctgatgaggct 8616365  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtg---taaagactttaagaatgttccaaacttggtgctgcgagatgttacccctctgt 304  Q
    |||||||||||||||||||||||||||||||||||| |   || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8616364 gttgctagtggggcagcagttcaggctgctttgttgggtactacagactttaagaatgttccaaacttggcgctgcgagatgttacccctctgt 8616271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 27831160 - 27831428
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  ||||||||||||| ||||| || ||  | ||||||||||||||||| || || || ||||| || ||||||||  |||||||| ||||    
T  27831160 ttgaggaaatcaatatggaccttttcaatgaatgtatggagactgttgagagttgtctcactgactctaagatggacaagagtagtatagatgatgttgt 27831259  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
    |||||| || ||||| || || ||||||||||||||| | ||| ||   || || ||||| || || ||||| ||||||| |||||||||||||||||||    
T  27831260 ccttgttggtggctcttcaaggattcccaaagtgcagcagctattggcggactttttcaagggaaaggatttgtgcaagagcatcaatcctgatgaggct 27831359  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtg 282  Q
    ||||||  ||| ||||| || ||||||||||||||| || | ||| ||| |||||||||||||||||||    
T  27831360 gttgcttttggtgcagctgtgcaggctgctttgttgagtgatgacattatgaatgttccaaacttggtg 27831428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 6789395 - 6789113
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  |||||||  ||||||||||||| || || || |||||||||||||||   ||  | ||||| || |||||||  ||| ||||| ||||    
T  6789395 ttgaggaaatcaatatggatatttttaatgagtgtatgaagaccgttgagagttgtcttgttgacgctaagatggacaagagtattgtaaatgatgttgt 6789296  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaag-atttatgcaagaacatcaatcctgatgaggc 212  Q
    |||||| || || || || |||||||||||||||||  ||||| ||   ||| | |||| |||||||| |||| |||| || |||||| |||||||||||    
T  6789295 ccttgttggtgggtcttctagaattcccaaagtgcaacaactattgcaagaagttttca-tgggaaaggatttgtgcatgagcatcaaccctgatgaggc 6789197  T
Q  213 tgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    |||||||   || ||||| || ||||||||||||||| |  ||| || ||||| |||||||||||||||||||| |||||||||    
T  6789196 tgttgcttacggtgcagctgtccaggctgctttgttgagcgaaggctctaagagtgttccaaacttggtgctgcaagatgttac 6789113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 10494659 - 10494944
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  |||| ||| |||| |  ||||| || |||| |||||| |||||||| |  |||||||||||| | |||| |    | |||||||||||    
T  10494659 ttgaggaaattaatatagactttttcatcgagtgtatgaatattgttgacagttgtctcagggattcaaagatatacaagaatgatattgatgatattgt 10494758  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
     ||||| || |||||||| || ||||||||||||||||| ||| ||   ||||| ||||| ||||| || |||| || |   ||||| || |||||||||    
T  10494759 tcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggct 10494858  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
    ||||||  ||| ||||| |||||||||||| | ||| || ||| |||||||||||| || ||||||||||| ||||||||||||||    
T  10494859 gttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttacccc 10494944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 8659246 - 8658961
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||| ||||||| |||||||||||||| || || ||||||||||||||||||| ||||||||| ||| ||| ||||    | || ||||||||    
T  8659246 ttgaggaaatgaatatggatctttttaatgagtgtatgaaaactgttgagagttgtcttagcgattcaaaaatacagatgagtgatattgacgatattgt 8659147  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
     ||||| || || ||||| || |||||||||||||| || ||| ||   ||  | |||     ||| | ||||| |||||  ||||| || |||||||||    
T  8659146 tcttgtgggtggttcgtctaggattcccaaagtgcaagatctattgcaagaccttttcccaaagaaggttttatacaagagtatcaacccagatgaggct 8659047  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
    ||||||  ||| |||||  |||| |||||| | ||  | |||| |||||||||||| |||||||||||||||| ||||||||||||    
T  8659046 gttgcttatggtgcagctcttcaagctgctgttttaagcaaaggctttaagaatgtcccaaacttggtgctgcaagatgttacccc 8658961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 17267822 - 17267554
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  |||||||||||||| ||||||||||  | | ||||||||  |||||||  ||| | ||||| || ||||| ||||| |||||| ||||    
T  17267822 ttgaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgatgctaagattgacaagagcagagttgatgatgttgt 17267723  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
    |||||| || || || || || ||||| ||||||||| ||||| ||    | |||||||| ||||| || |||||||| |  ||||| ||||||||||||    
T  17267722 ccttgttggtgggtcttctaggattccgaaagtgcagcaactattgcagaacttcttcaaggggaaggaattatgcaaaagtatcaaccctgatgaggct 17267623  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtg 282  Q
    ||||||  ||| || || |||||||||||||||||  ||  |  | | |||||||||||||||||||||    
T  17267622 gttgcttatggtgctgctgttcaggctgctttgttaagtggaagcgtcaagaatgttccaaacttggtg 17267554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 282
Target Start/End: Complemental strand, 17260112 - 17259856
Alignment:
Q  26 atatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgtccttgtcggcgg 125  Q
    |||||||||||||| ||||||||||  | | ||||||||  |||||||  |||   ||||| || ||||| ||| | |||||| |||||||||| || ||    
T  17260112 atatggaccttttttatgagtgcatggagattgttgagaagtgtcttagtgatggtaagattgacaagagcagaattgatgatgttgtccttgttggtgg 17260013  T
Q  126 ctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggg 225  Q
     || || || ||||| ||||||||| ||||| ||   || |||||||| || || || |||||||||| |||||| ||||||||||||||||||  |||     
T  17260012 atcttctaggattccgaaagtgcagcaactattgcaggatttcttcaagggtaaggaattatgcaagagcatcaaccctgatgaggctgttgcttatggt 17259913  T
Q  226 gcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtg 282  Q
    || || |||||||||||||||||  ||  |  | | |||||||||||||||||||||    
T  17259912 gctgctgttcaggctgctttgttaagtggaagcgtcaagaatgttccaaacttggtg 17259856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 300
Target Start/End: Complemental strand, 8545355 - 8545230
Alignment:
Q  175 gggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaa 274  Q
    ||||| || |||||||||| ||| || ||||||||||||||||||  ||| ||||| || |||||||||||| || || |||||  ||||||||| ||||    
T  8545355 gggaaggaattatgcaagagcattaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgctgagtgaagacaataagaatgtcccaa 8545256  T
Q  275 acttggtgctgcgagatgttacccct 300  Q
    || ||||||| |||||||||||||||    
T  8545255 acatggtgctacgagatgttacccct 8545230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 8654333 - 8654048
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  |||||||| |||| |||||||| || |||| |||||| |||||||| |  |||||||||||| | |||| |    | |||||| ||||    
T  8654333 ttgaggaaattaatatggactttttcaatgagtgtatcaatattgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgt 8654234  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
     || || || |||||||| || ||||||||||||||||| ||| ||   || || ||||| ||||| | ||| |  | ||| ||||| || |||||||||    
T  8654233 actcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggct 8654134  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
     ||||   ||| || || |||||||||||| | ||| || |||||||||||||||| || ||||||||||| || |||||||||||    
T  8654133 attgcatatggcgctgctgttcaggctgctattttgagtgaagactttaagaatgtccccaacttggtgctacgtgatgttacccc 8654048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 91 - 246
Target Start/End: Original strand, 29582203 - 29582358
Alignment:
Q  91 aagagtagagtagatgatattgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgca 190  Q
    |||||||| ||||||||||| |||||| | || ||||| || |||||||||||||||||  | ||| ||   ||||| ||||| ||||| ||||| ||||    
T  29582203 aagagtagtgtagatgatatcgtccttattggtggctcttctagaattcccaaagtgcatcagctattgcaagaatttttcaaggggaaggatttgtgca 29582302  T
Q  191 agaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttg 246  Q
     || |||||| ||||||||||||||||||  ||| ||||| || ||||||||||||    
T  29582303 tgagcatcaaccctgatgaggctgttgcttatggtgcagctgtgcaggctgctttg 29582358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 300
Target Start/End: Complemental strand, 8667213 - 8667016
Alignment:
Q  103 gatgatattgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatc 202  Q
    |||||| |||| |||||||| |||||||| || ||||||||||||||||||| | ||   ||||  ||||| ||||| || |||| || |   ||||| |    
T  8667213 gatgatgttgtacttgtcggtggctcgtctaggattcccaaagtgcaggaacaattgctagaatatttcaaggggaaggaattattcatgggtatcaacc 8667114  T
Q  203 ctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccct 300  Q
    | || ||||||||||||  ||| ||||| |||||||||||| | ||| || ||| || ||||||||| || ||||||||||| |||||||| ||||||    
T  8667113 cagacgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctgtaagaatgtccccaacttggtgctacgagatgtgacccct 8667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 3146966 - 3146867
Alignment:
Q  195 catcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgtt 294  Q
    |||||| ||||||||||| ||||||  ||| ||||| || || |||||||||||| || |||||||||| |||||||||||||||||| ||| |||||||    
T  3146966 catcaaccctgatgaggccgttgcttatggtgcagctgtgcaagctgctttgttgagtgaagactttaaaaatgttccaaacttggtggtgcaagatgtt 3146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 27846566 - 27846655
Alignment:
Q  189 caagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaactt 278  Q
    ||||| |||||| ||||||||||||||||||  ||| ||||| || ||||||||||||||| || | ||| |||||||||||||||||||    
T  27846566 caagagcatcaaccctgatgaggctgttgcttttggagcagctgtgcaggctgctttgttgagtgatgacattaagaatgttccaaactt 27846655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 1301343 - 1301208
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  ||||||| |||||||||||||| | ||| || |||||||||||||||| ||||||||| |||   | ||||    | |||||||||||    
T  1301343 ttgaggaaattaatatggatctttttaatgagtgtacaaaaaccgttgagagttgtcttagcgattcaaaaatatgcatgagtgatatcgatgatattgt 1301244  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgca 149  Q
     ||||| || |||||||| || ||||||||||||||    
T  1301243 tcttgtgggtggctcgtctaggattcccaaagtgca 1301208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 8576054 - 8575927
Alignment:
Q  169 ttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatg 268  Q
    ||||| ||||| || ||||| |||| |||||| ||||||||||||||||||  ||| || |  || || |||||||||||| || ||| |  ||||||||    
T  8576054 ttcaaggggaaggaattatgtaagagcatcaaccctgatgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtgaaggcagtaagaatg 8575955  T
Q  269 ttccaaacttggtgctgcgagatgttac 296  Q
    |||||||||||||| | |||||||||||    
T  8575954 ttccaaacttggtgttacgagatgttac 8575927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 8646605 - 8646475
Alignment:
Q  169 ttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatg 268  Q
    ||||||| ||| || |||||| ||| |||||| ||||||| ||| ||||||  ||| ||||| |||||||||||||| || ||| | | |||||||||||    
T  8646605 ttcaatgagaaggaattatgcgagagcatcaaccctgatgtggccgttgcttatggcgcagccgttcaggctgctttattatgtgatggctttaagaatg 8646506  T
Q  269 ttccaaacttggtgctgcgagatgttacccc 299  Q
     ||||||||||||| | | |||||| |||||    
T  8646505 ctccaaacttggtgtttcaagatgtcacccc 8646475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 296
Target Start/End: Complemental strand, 8581422 - 8581301
Alignment:
Q  175 gggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaa 274  Q
    ||||| || |||||||||| |||||| ||||||||||||||||||  ||| || ||  |||||||||||||| |  || ||| | |||||| ||||||||    
T  8581422 gggaaggaattatgcaagagcatcaaccctgatgaggctgttgcttatggtgctgctattcaggctgctttggttagtgaaggcattaagagtgttccaa 8581323  T
Q  275 acttggtgctgcgagatgttac 296  Q
    ||||| |  |||||||||||||    
T  8581322 acttgattttgcgagatgttac 8581301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 8601842 - 8601625
Alignment:
Q  29 tggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgtccttgtcggcggctc 128  Q
    ||||||| |||||  |||| ||| | |||||||| ||||||||||  ||| |  |||| || |||||||| || ||||||  ||||||||| ||||| ||    
T  8601842 tggacctctttaagaagtgtatagagactgttgaaagttgtcttagtgatgctcagatcgaaaagagtagtgtggatgatgctgtccttgttggcggttc 8601743  T
Q  129 gtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggca 228  Q
     || || ||||||||||||||  || || |||  ||||| |||||| |||| ||  | |||  || |||||||||||||||||| |||||   ||| |||    
T  8601742 ttctaggattcccaaagtgcaacaattactgaaagaatttttcaattggaaggacatttgcgtgagcatcaatcctgatgaggcagttgcctatggcgca 8601643  T
Q  229 gcagttcaggctgctttg 246  Q
    |||||||| |||||||||    
T  8601642 gcagttcaagctgctttg 8601625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 13333835 - 13333934
Alignment:
Q  196 atcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgtta 295  Q
    ||||| || |||||||||||||||  ||| ||||| |||||||||||| | ||| || ||| |||||||| ||| || ||||||||||| ||||||||||    
T  13333835 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagactgtcccgaacttggtgctacgagatgtta 13333934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 8537738 - 8537629
Alignment:
Q  195 catcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgtt 294  Q
    |||||| |||||||| |||||||||  ||| || || || ||||||||||||||| |   || | |||||| |||||| |||||||||||||||||||||    
T  8537738 catcaaccctgatgaagctgttgcttatggtgctgctgtccaggctgctttgttgagcggaggcattaagactgttccgaacttggtgctgcgagatgtt 8537639  T
Q  295 acccctctgt 304  Q
    |  |||||||    
T  8537638 atacctctgt 8537629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 29578047 - 29578239
Alignment:
Q  104 atgatattgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcc 203  Q
    |||| ||||||||||| || || || || |||||||||||||||| | ||||| ||   || || ||||| || |  ||||| |||| || ||| || ||    
T  29578047 atgaaattgtccttgttggaggttcatctagaattcccaaagtgcggaaactattgcaagactttttcaagggtagggatttgtgcatgagcataaaccc 29578146  T
Q  204 tgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    ||| ||||||||||||  ||| ||||| || |||||||||||||||  | | | | |||||||||||||||| |||||  |||||||| ||||    
T  29578147 tgacgaggctgttgcttatggtgcagctgtgcaggctgctttgttgattgatggcattaagaatgttccaaatttggtcttgcgagatattac 29578239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 8609645 - 8609518
Alignment:
Q  169 ttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatg 268  Q
    |||||||| || ||||| || | || |||||| ||||||||||| ||||||  ||| || || || ||||||||||||||| || ||| | | ||    |    
T  8609645 ttcaatggaaaggatttgtgtatgagcatcaaccctgatgaggcggttgcttatggtgctgctgtccaggctgctttgttgggtgaaggcatcaaatcag 8609546  T
Q  269 ttccaaacttggtgctgcgagatgttac 296  Q
    ||||||||||||||||||||||||||||    
T  8609545 ttccaaacttggtgctgcgagatgttac 8609518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 8590340 - 8590239
Alignment:
Q  195 catcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgtt 294  Q
    ||||||||| |||||||||||||||  ||| ||||| ||||| ||||||||| | ||| | |   ||||||||||||| || |||||||| | |||||||    
T  8590340 catcaatccagatgaggctgttgcttatggtgcagctgttcaagctgctttgctttgtgatgggattaagaatgttcctaatttggtgctacaagatgtt 8590241  T
Q  295 ac 296  Q
    ||    
T  8590240 ac 8590239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 8636804 - 8636868
Alignment:
Q  190 aagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaa 254  Q
    |||| ||||||  |||||||||||||||||  ||| |||||||| |||||||| |||||||||||    
T  8636804 aagagcatcaacgctgatgaggctgttgcttatggagcagcagtccaggctgcattgttgtgtaa 8636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 8559019 - 8558980
Alignment:
Q  261 taagaatgttccaaacttggtgctgcgagatgttacccct 300  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  8559019 taagaatgttccaaacatggtgctgagagatgttacccct 8558980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 1301096 - 1301059
Alignment:
Q  262 aagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  1301096 aagaatgtcccaaacttggtgctgcaagatgttacccc 1301059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 30775135 - 30774849
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  |||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||    
T  30775135 ttgaggaaatcaatatggacctttttaatgagtgtatacagactgttgagagttgtcttactgattcaaaggtagacaagagtagtgtagatgatattgt 30775036  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
     |||||||| || || || || ||||||||||||||||||||| || |  | |||||||||||||| ||||| ||||||| ||||||||||||||||||     
T  30775035 tcttgtcggtggttcttctaggattcccaaagtgcaggaactattgcgtaatttcttcaatgggaaggatttgtgcaagagcatcaatcctgatgaggca 30774936  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccct 300  Q
    ||||||   |||||||| || ||||||||| | ||| || ||| | |||||||||  ||||| ||||||||||||||||| ||||||    
T  30774935 gttgctcacggggcagctgtccaggctgctctattgagtgaaggcattaagaatgccccaaagttggtgctgcgagatgtcacccct 30774849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 9336190 - 9336461
Alignment:
Q  28 atggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgtccttgtcggcggct 127  Q
    |||||| |||| |||||||| || |||| |||||| |  ||||| |  |||||||||||| | |||||||   | ||||||||||| ||||| || ||||    
T  9336190 atggactttttcaatgagtgtatgaatattgttgacacctgtctcagggattcaaagatatacaagagtaatattgatgatattgttcttgtgggtggct 9336289  T
Q  128 cgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggc 227  Q
    |||| || ||||| |||||||| |||||| ||   ||||| ||||| ||||| || |||| || |   ||||| || |||||||||||||||  ||| ||    
T  9336290 cgtctaggattccgaaagtgcaagaactattgctagaatttttcaaggggaaggaattattcatgggtatcaacccagatgaggctgttgcttatggtgc 9336389  T
Q  228 agcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
    ||| ||||| |||||| | ||| || ||| |||||||||||  || ||||||||||| ||||||||||||||    
T  9336390 agctgttcaagctgctattttgagtgaaggctttaagaatgcgcccaacttggtgctacgagatgttacccc 9336461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 35132340 - 35132071
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagta-gagtagatgatattg 112  Q
    ||||||||||| ||   ||||||||||||||||| || ||||| || ||||||||||| |  ||| | ||||| || ||||| | | ||||||||| |||    
T  35132340 ttgaggaaatgaatgcagacctttttaatgagtgtatgaataccgtagagagttgtctcattgatgctaagatggacaagagcaagggtagatgatgttg 35132241  T
Q  113 tccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggc 212  Q
    | ||||| || || || || || ||||||||||||||| | ||| ||    | || ||||| ||||| || || ||||||| ||| || || ||||||||    
T  35132240 ttcttgttggagggtcttctaggattcccaaagtgcagcagctattgcaaaactttttcaaagggaaggagttgtgcaagagcattaaccccgatgaggc 35132141  T
Q  213 tgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtg 282  Q
    ||| |||  |||||||||||||||||||||||||||| |||||| | | || ||||||||||| ||||||    
T  35132140 tgtagcttatggggcagcagttcaggctgctttgttgagtaaaggcataaaaaatgttccaaagttggtg 35132071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 16662289 - 16662562
Alignment:
Q  26 atatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgtccttgtcggcgg 125  Q
    |||||| ||||||||| ||||| || || | ||||||||||||| ||   ||||||||||| || ||| |  | ||| |||||||||| |||||||| ||    
T  16662289 atatgggcctttttaacgagtgtatgaagattgttgagagttgttttgtggattcaaagatggacaaggggggtgtacatgatattgttcttgtcggggg 16662388  T
Q  126 ctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggg 225  Q
    |||||| || ||||| |||||||||||| || || |  | |||||||||||||| || || ||||||| |||||| ||||||||||||||||||  ||||    
T  16662389 ctcgtctaggattccaaaagtgcaggaattattgcgtaacttcttcaatgggaaggagttgtgcaagagcatcaaccctgatgaggctgttgcttatggg 16662488  T
Q  226 gcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
    ||||| || || |||||| ||||| || ||| | ||||| ||||||||||||||||||||||||| ||||||||    
T  16662489 gcagctgtgcaagctgctgtgttgagtgaaggcattaaggatgttccaaacttggtgctgcgagacgttacccc 16662562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 14703291 - 14703021
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    |||| |||||| |||||||| |||||||||||||  | || | |||||||||||||||||  ||| | ||||| || |||||||||||||||||| ||||    
T  14703291 ttgaagaaatgaatatggacttttttaatgagtgtgtgaagattgttgagagttgtcttattgatgctaagatggacaagagtagagtagatgatgttgt 14703192  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
     |||||||| || || ||  | ||||||||||| ||| || || |    || || ||| | ||||| || || ||||| | ||| || |||||||| |||    
T  14703191 tcttgtcggtgggtcttctcggattcccaaagtacagcaattattacaggactttttccaggggaaggagttgtgcaacagcattaaccctgatgaagct 14703092  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgct 284  Q
    || |||  ||||||||| |||||||||||||||||| || ||||| | ||||||||||| || ||||||||    
T  14703091 gtagcttatggggcagctgttcaggctgctttgttgagtgaagacgtcaagaatgttccgaagttggtgct 14703021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 12245715 - 12245973
Alignment:
Q  38 ttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgtccttgtcggcggctcgtccagaat 137  Q
    ||||||| || ||||| ||||||||||||||| |||  ||| ||||||| || |||||||   |||||||| |||| ||||| || || || || || ||    
T  12245715 ttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagtactatagatgattttgtacttgttggtggatcttctaggat 12245814  T
Q  138 tcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcag 237  Q
    ||||||||| ||  | ||| |    || || ||||| ||||| || || ||||||| ||| || ||||| ||||||||||||  ||||||||| |||||     
T  12245815 tcccaaagtccaacagctattacaggactttttcaacgggaaggaattgtgcaagagcattaaccctgacgaggctgttgcttatggggcagctgttcaa 12245914  T
Q  238 gctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    |||||||||||| |||||||  |||||||||||||||| |||||| |||  ||||||||    
T  12245915 gctgctttgttgagtaaagatgttaagaatgttccaaatttggtgttgcaggatgttac 12245973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 12258866 - 12259148
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  || |||| ||||| ||||| ||||| || |||||||||||||||||||| ||| | || |  || |||||||  ||||||||| ||||    
T  12258866 ttgaggaaataaatttggaacttttcaatgaatgcatgaagactgttgagagttgtcttacggatgctaacacggacaagagtaatgtagatgatgttgt 12258965  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
    |||||| || || || || || |||| |||||||||| | ||| |    || || ||||| |||||||| || ||||||| ||| |||||||||||||||    
T  12258966 ccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggct 12259065  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    || |||  |||||| ||  ||||||||||||||||  || ||||  |  ||||||||||||| |||| |||||  ||||||||    
T  12259066 gtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttggagctgcaggatgttac 12259148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 43625107 - 43625009
Alignment:
Q  202 cctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccct 300  Q
    ||||||||||||||||||  ||| ||||| || ||||||||| | ||| |||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  43625107 cctgatgaggctgttgcttatggtgcagctgtccaggctgctattttgagtaaaggcattaagaatgttccaaaattggtgctgcgagatgttacccct 43625009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 296
Target Start/End: Complemental strand, 7542022 - 7541827
Alignment:
Q  101 tagatgatattgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaa 200  Q
    |||||||| |||||||||||||||| || || || ||||||| ||| ||  | ||| | |  || || |||||||| || || || ||||||| ||| ||    
T  7542022 tagatgatgttgtccttgtcggcgggtcttcgaggattcccatagtacatcagctattaaaggactttttcaatggaaaggacttgtgcaagagcattaa 7541923  T
Q  201 tcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    |||||||||||||||||||  ||||||||| ||||||||||| |||||| ||  || | ||||||| | |||||| ||||||||||  ||||||||    
T  7541922 tcctgatgaggctgttgcttatggggcagctgttcaggctgcattgttgagtggaggcgttaagaacgctccaaagttggtgctgcaggatgttac 7541827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 11999136 - 11999009
Alignment:
Q  169 ttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatg 268  Q
    ||||| ||||| || || ||||||| ||| || |||||||||||||| |||  ||||||||| ||||| |||||||||||| || ||||  |||||||||    
T  11999136 ttcaacgggaaggagttgtgcaagagcattaaccctgatgaggctgtagcttatggggcagctgttcaagctgctttgttgagtgaagatgttaagaatg 11999037  T
Q  269 ttccaaacttggtgctgcgagatgttac 296  Q
    ||||||| |||||| |||  ||||||||    
T  11999036 ttccaaatttggtgttgcaggatgttac 11999009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 12234572 - 12234430
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||| ||||||| ||| ||| |||||| || || | |||||||||||||||||  ||| | ||||| || || ||||| || |||||  ||||    
T  12234572 ttgaggaaatgaatatggatcttcttattgagtgtatgaagattgttgagagttgtcttagtgatgctaagatggacaaaagtagggtggatgaagttgt 12234473  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaacta 156  Q
    |||| | ||||| || || || ||||||||||||||| |||||    
T  12234472 ccttattggcgggtcctctaggattcccaaagtgcagcaacta 12234430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 299
Target Start/End: Original strand, 16657898 - 16658087
Alignment:
Q  110 ttgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatga 209  Q
    |||| ||||| || ||||| || || ||||||||||||||||| ||| ||   || || ||||| || || ||||||||||| |  ||||| || |||||    
T  16657898 ttgttcttgtgggtggctcatctaggattcccaaagtgcaggatctattgcaagactttttcaagggcaaggatttatgcaaaagtatcaacccggatga 16657997  T
Q  210 ggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
     |||||||||   || ||||| ||||| |||||| | ||| || ||| |||||||||||| ||| | |||||| || |||||||||||||    
T  16657998 agctgttgcttacggtgcagctgttcaagctgctattttgagtgaaggctttaagaatgtcccagatttggtgttgagagatgttacccc 16658087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 16657802 - 16657874
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagat 86  Q
    ||||||||||  ||||||| ||||| |||||||| || || |||||||||| |||||||   |||||||||||    
T  16657802 ttgaggaaattaatatggatcttttcaatgagtgtatgaaaactgttgagaattgtcttcgtgattcaaagat 16657874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 34467170 - 34467355
Alignment:
Q  111 tgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgag 210  Q
    |||||||||||| ||||| || || ||||||||||||||| | ||| || | || || |||||||| || ||| ||||||| | |||||| |||||||||    
T  34467170 tgtccttgtcgggggctcttctaggattcccaaagtgcagcagctattgcgggactttttcaatggtaaggatctatgcaatagcatcaaccctgatgag 34467269  T
Q  211 gctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    ||||| |||  ||  ||||| || || |||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  34467270 gctgtcgcttatgtcgcagctgtgcaagctgctttgttgagtaaaggctttaacaatgttccaaacttggtgctgcgagatgttac 34467355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 15594873 - 15594649
Alignment:
Q  58 gttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaa 157  Q
    |||||||||||||||   ||| | |||||  | |||||||| ||| ||||||||||| |||| || || || || || ||||||||||||||  |||||     
T  15594873 gttgagagttgtcttgatgatgctaagatgaataagagtagtgtaaatgatattgtcattgttggtgggtcttctaggattcccaaagtgcaacaactat 15594774  T
Q  158 tgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaaga 257  Q
    |||  || || ||| | || || || || |||| || |||||| ||||||||||||||||||  ||| ||||| || ||||||||||||||| || |||     
T  15594773 tgaaggattttttcgagggaaaggaattgtgcatgagcatcaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgttgagtgaagg 15594674  T
Q  258 ctttaagaatgttccaaacttggtg 282  Q
     ||||| ||||||||||||||||||    
T  15594673 ttttaaaaatgttccaaacttggtg 15594649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 52549416 - 52549513
Alignment:
Q  199 aatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    ||||||||||||| ||| |||  ||| ||||| ||||||||||| |||||| || ||| | || ||||||||||||| ||||||||||  ||||||||    
T  52549416 aatcctgatgaggttgtagcttatggcgcagctgttcaggctgcattgttgagtgaaggcattcagaatgttccaaagttggtgctgcaggatgttac 52549513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 4678842 - 4679127
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgt 113  Q
    ||||||||||  ||||||||||||| || ||||| ||  | |||||| ||||||||||||  |||||||||||      |||||   | |||||| ||||    
T  4678842 ttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatgcgcgggagtaatattgatgatgttgt 4678941  T
Q  114 ccttgtcggcggctcgtccagaattcccaaagtgcaggaactaatgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggct 213  Q
     ||||| || || || || || ||||||||||||||||| ||| ||   || || || ||  |||| ||||| |||||||  ||||| || |||||||||    
T  4678942 tcttgtgggtggttcatcgaggattcccaaagtgcaggatctattgcaagacttttttaagcggaaggatttgtgcaagagtatcaacccagatgaggct 4679041  T
Q  214 gttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttacccc 299  Q
    ||||||  ||| |||||  | || |||||| | ||| |  |||  ||||||||||| || || || ||||||||||||||||||||    
T  4679042 gttgcttatggtgcagctatccaagctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttacccc 4679127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 52549297 - 52549353
Alignment:
Q  14 ttgaggaaatgtatatggacctttttaatgagtgcataaatactgttgagagttgtc 70  Q
    ||||||||||| |||||||||||||||| ||||| || || | |||||| |||||||    
T  52549297 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtc 52549353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 249
Target Start/End: Complemental strand, 12528343 - 12528152
Alignment:
Q  58 gttgagagttgtcttaccgattcaaagatagagaagagtagagtagatgatattgtccttgtcggcggctcgtccagaattcccaaagtgcaggaactaa 157  Q
    ||||| |||||| | |||||| | ||||| || |||||||| |||||||||||||| ||||| || |||||||| || |||||||||||| || | |||     
T  12528343 gttgaaagttgtttgaccgatgctaagatggacaagagtagtgtagatgatattgtacttgttggtggctcgtctaggattcccaaagtgaagcagctat 12528244  T
Q  158 tgagcgaattcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttg 249  Q
    ||   || || ||||| || || || |||| ||||| |||||| ||||||||||||||||||  ||| || || ||||||||||||||||||    
T  12528243 tgcaggagtttttcaagggcaaggagttatacaagagcatcaaccctgatgaggctgttgcttatggtgccgctgttcaggctgctttgttg 12528152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 43744538 - 43744419
Alignment:
Q  175 gggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaa 274  Q
    ||||| ||||| || |||||||| || ||||||||||| ||||||| ||| ||||| || ||||||||||||||| || ||| |||||| || |||||||    
T  43744538 gggaaggatttgtgtaagaacattaaccctgatgaggcagttgctattggtgcagctgtgcaggctgctttgttgagtgaaggctttaaaaaagttccaa 43744439  T
Q  275 acttggtgctgcgagatgtt 294  Q
    || ||||||||| |||||||    
T  43744438 acgtggtgctgcaagatgtt 43744419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 28219613 - 28219519
Alignment:
Q  202 cctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgtgtaaagactttaagaatgttccaaacttggtgctgcgagatgttac 296  Q
    ||||||||||||||||||  ||| ||||| || ||||||||||||||| || ||| |||||| || ||||| || |||||||||| |||||||||    
T  28219613 cctgatgaggctgttgcttatggtgcagctgtgcaggctgctttgttgagtgaaggctttaaaaaagttccgaagttggtgctgcaagatgttac 28219519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University