View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_45 (Length: 321)
Name: NF10841_low_45
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 25978890 - 25979195
Alignment:
| Q |
1 |
tcttccacagcaactgcagcagcaaggttgcttttcttcttaattgatctctccttttcttgtttaggttcatttgtcgaaagcatgaccatatcagctg |
100 |
Q |
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| T |
25978890 |
tcttccacagcaactgcagcagcaaggttgcttttcttcttaattgatctctccttttcttgtttaggttcatttgtcgaaagcatgaccatatcagctg |
25978989 |
T |
|
| Q |
101 |
tcacaacacttaaccgttcttgaatttttatgtgttagtttgccattttacatcatcttcagcctcatccgtctattcaactggatttcaagtagatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25978990 |
tcacaacacttaaccgttcttgaatttttatgtgttggtttgccattgtacatcatcttcagcctcatccgtctattcaactggatttcaagtagatgta |
25979089 |
T |
|
| Q |
201 |
tgatcttcatcacaaccatttcc---nnnnnnnnnnacttgaagagcttgattttgctgtgctttccttagttcctttcttcaatttttccagctcttca |
297 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25979090 |
tgatcttcatcgcaaccatttcctttttttttttttacttgaagagcttgattttgctgtgctttccttagttcctttcttcaatttttccagctcttca |
25979189 |
T |
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| Q |
298 |
tcagcc |
303 |
Q |
| |
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|||||| |
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| T |
25979190 |
tcagcc |
25979195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 302
Target Start/End: Original strand, 25973660 - 25973816
Alignment:
| Q |
138 |
gtttgccattttacatcatcttcagcctcatccgtctattcaactggatttcaagtagatgtatgatcttcatcacaaccatttccnnnnnnnnnnactt |
237 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| || ||||||| ||| |
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| T |
25973660 |
gtttgccattgtacatcatcttcagcctcatccgtctcatcaactggacttcaagtagatgtatgatctttatcagaatcatttccatttttc----ctt |
25973755 |
T |
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| Q |
238 |
gaagagcttgattttgctgtgctttccttagttcctttcttcaatttttccagctcttcatcagc |
302 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
25973756 |
gaagagcttgattttgtggtgctttccttagttc----cttcaattttttcagctcttcgtcagc |
25973816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25973535 - 25973628
Alignment:
| Q |
1 |
tcttccacagcaactgcagcagcaaggttgcttttcttcttaattgatctctccttttcttgtttaggttcatttgtcgaaagcatgaccatat |
94 |
Q |
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||||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
25973535 |
tcttccacagcaaatgcagcagcaaggttgctcttcctcttaattgatttatccttctcttgtttaggttcatttgtcgagaccatgaccatat |
25973628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31829656 - 31829611
Alignment:
| Q |
1 |
tcttccacagcaactgcagcagcaaggttgcttttcttcttaattg |
46 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
31829656 |
tcttccacagcaactgcagcagcaaggtaattcttcttcttaattg |
31829611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 31829378 - 31829322
Alignment:
| Q |
66 |
aggttcatttgtcgaaagcatgaccatatcagctgtcacaacacttaaccgttcttg |
122 |
Q |
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||||||| |||| || ||||| |||||||||||||||||| |||| ||| ||||||| |
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| T |
31829378 |
aggttcagttgtggagagcataaccatatcagctgtcacagcactcaactgttcttg |
31829322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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