View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_47 (Length: 313)
Name: NF10841_low_47
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 34942844 - 34943087
Alignment:
| Q |
18 |
gaaagtacatctgttaaatccaaacaagcaaaggacagtaaaggtagctagcacataatttactttatcaaaacgagtttcctaagcaaattgtgataga |
117 |
Q |
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| T |
34942844 |
gaaagtacatctgttaaatccaaacaagcaaaggacagtaaaggtagctagcacataatttactttatcaaaacgagtttcctaagcaaattgtgataga |
34942943 |
T |
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| Q |
118 |
gttggcacagagattctcagtggtttctatcaaagtcaaaacaaagatatatttactttaatagtttagagatgctctctatttttatgtttgatcaatg |
217 |
Q |
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| T |
34942944 |
gttggcacagagattctcagtggtttctatcaaagtcaaaacaaagatatatttactttaatagtttagagatgctctctatttttatgtttgatcaatg |
34943043 |
T |
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| Q |
218 |
tatcgtgttttgtttgcactctgcaacctaagattctcatgtcc |
261 |
Q |
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| T |
34943044 |
tatcgtgttttgtttgcactctgcaacctaagattctcatgtcc |
34943087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 34942407 - 34942498
Alignment:
| Q |
169 |
tttactttaatagtttagagatgctctctatttttatgtttgatcaatgtatcgtgttttgtttgcactctgcaacctaagatt-ctcatgtcc |
261 |
Q |
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| T |
34942407 |
tttacttttatagtttggagatgctctccattttcatgtttgatcaatg--tcgtgttttgtatgcgctctgctactcaagattcctcatgtcc |
34942498 |
T |
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