View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_50 (Length: 305)
Name: NF10841_low_50
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 42738284 - 42738016
Alignment:
| Q |
18 |
cagagagcaaaggctggttattttgtccagttgcatagacttattatatgcatgtatggcatatatagagagagaaagagcaggctccactccagcaaaa |
117 |
Q |
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| T |
42738284 |
cagagagcaaaggctgattattttgtccagttgcatagacttattatatgcatgtatggcatatatagagagagaaagagcaggctccactccagcaaaa |
42738185 |
T |
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| Q |
118 |
ctctgtaattgcgacacgtaagcattttgcttcgaaagtagacacaagaaaatatggatacaaggacaagaaaatgtggagccgatattttacgcaagca |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
42738184 |
ctctgtaattgcgacacgtgagcattttgcttcgaaagtagacacaagaaaatatggatataaggacaagaaaatgtggagccgatattttatgcaagca |
42738085 |
T |
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| Q |
218 |
tgcatcagtgtatagtgtagcattatgtttttattcatgtgcatattagacagagaccctatctacatg |
286 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42738084 |
tgcatcagtgtataatgtagcattatgtttttattcatgtgcatattagacagagaccctatctacatg |
42738016 |
T |
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