View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_53 (Length: 290)
Name: NF10841_low_53
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 3454862 - 3454594
Alignment:
| Q |
1 |
tagtaaggcatgtactccagacagctgcagcgccgttgcagaaaatgttaacattggaaggaaatgtagcagatgatatacctattgaggtatgcaacac |
100 |
Q |
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| T |
3454862 |
tagtaaggcatgtactccagacagctgcagcaccattgcagaaaatgctaacactggaaggaaatgtagcagatgatatacctattgaggtatgcaacac |
3454763 |
T |
|
| Q |
101 |
ttctatacttggttatcagataaatgccaagtaatttacacttaa-aattctttcatgcataaaactgcaggtcaccggagatgttttaaggattcggca |
199 |
Q |
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| T |
3454762 |
ttgtatacttagttatcagataaatgccaagaaatttacacttaacaattctttcatgcataaaaatgcaggtcactggagatgttttaaggattcggca |
3454663 |
T |
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| Q |
200 |
aattctcacaaatttagtcaggtacgataatatatttgattgctaatctcttgagtttgtataaccaag |
268 |
Q |
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| T |
3454662 |
gattctcacaaatttagtcaggtactacaatatatttgattgctaatctcttgattttgtataaccaag |
3454594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 48695984 - 48696042
Alignment:
| Q |
166 |
tgcaggtcaccggagatgttttaaggattcggcaaattctcacaaatttagtcaggtac |
224 |
Q |
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| T |
48695984 |
tgcaggtcattggtgatgttttaaggattcggcaaattctcacaaatttaaccaggtac |
48696042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 44196104 - 44196157
Alignment:
| Q |
129 |
aagtaatttacacttaaaattctttcatgcataaaactgcaggtcaccggagat |
182 |
Q |
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| T |
44196104 |
aagtaatttacactcacaattctttgatgcataaaactgcaggtcactggagat |
44196157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 48695761 - 48695851
Alignment:
| Q |
1 |
tagtaaggcatgtactccagacagctgcagcgccgttgcagaaaatgttaacattggaaggaaatgtagcagatgatatacctattgaggt |
91 |
Q |
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| T |
48695761 |
tagtaaagcatgtgcttcagacagccgcagcatcattgcagaaaatattaaccatagaaggacatgtagcagatgatgtacctatagaggt |
48695851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 50806773 - 50806720
Alignment:
| Q |
129 |
aagtaatttacacttaaaattctttcatgcataaaactgcaggtcaccggagat |
182 |
Q |
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| T |
50806773 |
aagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagat |
50806720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 50869104 - 50869157
Alignment:
| Q |
129 |
aagtaatttacacttaaaattctttcatgcataaaactgcaggtcaccggagat |
182 |
Q |
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|||||||||||||| | |||||||| ||||||||||| ||||||||| |||||| |
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| T |
50869104 |
aagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagat |
50869157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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