View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_54 (Length: 289)
Name: NF10841_low_54
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 53 - 276
Target Start/End: Original strand, 34059181 - 34059404
Alignment:
| Q |
53 |
tctcatattcactacacattctatttatgtttttattttctttaggtgaaattttctcttattgtatgtgcactttatgatttgtcattagtttactttt |
152 |
Q |
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| T |
34059181 |
tctcatattcactacacattctatttatgtttttattttctttaggtgaaattttctcttattgtatgtgcactttatgatttgtcattagtttactttt |
34059280 |
T |
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| Q |
153 |
tagtttcttaaattaaaattttcagaaagtcgttagaaaactaagcatcttcataattgcaccattttgttcaaaactttgagtcacatatgaagcatta |
252 |
Q |
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| T |
34059281 |
tagtttcttaaattaaaattttcagaaagtcgttagaaaactaagcatcttcataattgcaccattttgttcaaaactttgagtcacatatgaagcatta |
34059380 |
T |
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| Q |
253 |
aaagacacatccatcctcttgttc |
276 |
Q |
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|||||||||||||||||||||||| |
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| T |
34059381 |
aaagacacatccatcctcttgttc |
34059404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 24235886 - 24235826
Alignment:
| Q |
38 |
ctaaaggtgaaattttctcatattcactacacattctattta-tgtttttattttctttag |
97 |
Q |
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| T |
24235886 |
ctaaaggtgaaattttctcacattcactacacattttgtttattcttcttattttctttag |
24235826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 7818811 - 7818868
Alignment:
| Q |
38 |
ctaaaggtgaaattttctcatattcactacacattctatttatgtttttattttctttag |
97 |
Q |
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| T |
7818811 |
ctaaaggtgaaattttatcacattcactacacattttgttta--tttttattttctttag |
7818868 |
T |
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