View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_55 (Length: 289)
Name: NF10841_low_55
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 6969068 - 6969337
Alignment:
| Q |
1 |
tgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatattgctagttattttata |
100 |
Q |
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| T |
6969068 |
tgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatattgctagttattttata |
6969167 |
T |
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| Q |
101 |
ttagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagattaatatgctaaggttga |
200 |
Q |
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| T |
6969168 |
ttagagtcttattaaaacattagtatgaatctctatttctatgcttacattcgagtcttaatttactttattataagttagattaatatgctaaggttga |
6969267 |
T |
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| Q |
201 |
aacattgttggtgattatgctgaattacaaactaaacaatgtacttcaggccttataacaaagtaggttg |
270 |
Q |
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| T |
6969268 |
aacattgttggtgattatgctgaattacaaactaaacaatgtacttcaggccttataacaaagtaggttg |
6969337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 1000088 - 999959
Alignment:
| Q |
72 |
tcctaggcaatattgctagttattttatatt--agagtcttattaaaa------cattactatgaatctctatttctatgcttacattagagtcttaatt |
163 |
Q |
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| T |
1000088 |
tcctaggcaatattgctggttattttatattttagggtcttattaaaattaaaacattagtat-agtatctatttctatgcttacattagtgtcttgatt |
999990 |
T |
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| Q |
164 |
tactttattataagttagattaatatgctaa |
194 |
Q |
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| T |
999989 |
tacattaatataagttagattaatgtgctaa |
999959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 2178425 - 2178513
Alignment:
| Q |
100 |
attagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagattaatat |
189 |
Q |
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| T |
2178425 |
attagagtcgtattaaaacattagtatgaatatctatttccatgcttacattacattcttattttagattattat-agttagattaatat |
2178513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 51315915 - 51315840
Alignment:
| Q |
91 |
ttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttac |
166 |
Q |
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| T |
51315915 |
ttattttgcattagagtcttatgaaaacgttaatatgaatatctatttccatgtttacaatagagtcttattttac |
51315840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 51316032 - 51315982
Alignment:
| Q |
5 |
aaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagat |
55 |
Q |
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| T |
51316032 |
aaagaagaagggactagtggagaggattcatcagagaaggaggcagaagat |
51315982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1000191 - 1000130
Alignment:
| Q |
1 |
tgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaag |
62 |
Q |
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|||||||||| | ||||| ||||||||| |||| |||| ||||||||||||||||||||| |
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| T |
1000191 |
tgagaaagaaaaggggactagtgaagaggattcactagaggaggaggcagaagatgcagaag |
1000130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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