View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_56 (Length: 288)

Name: NF10841_low_56
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_56
NF10841_low_56
[»] chr6 (2 HSPs)
chr6 (1-272)||(9282544-9282815)
chr6 (1-86)||(10442071-10442155)
[»] chr8 (1 HSPs)
chr8 (1-267)||(18187060-18187322)
[»] chr4 (1 HSPs)
chr4 (1-164)||(24838132-24838295)
[»] scaffold1458 (1 HSPs)
scaffold1458 (1-86)||(122-207)
[»] scaffold0515 (1 HSPs)
scaffold0515 (1-86)||(2069-2154)
[»] scaffold0306 (1 HSPs)
scaffold0306 (1-86)||(2069-2154)
[»] scaffold0317 (1 HSPs)
scaffold0317 (1-86)||(17556-17639)
[»] chr5 (1 HSPs)
chr5 (11-75)||(31851785-31851849)
[»] chr1 (1 HSPs)
chr1 (23-73)||(9947257-9947307)
[»] chr2 (2 HSPs)
chr2 (4-49)||(15143250-15143295)
chr2 (53-153)||(15143530-15143630)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 9282544 - 9282815
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgctaaacatcagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9282544 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgctaaacatcagcaa 9282643  T
Q  101 attgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagagaccttcaagggaggggacatgtttttgccaaatttagtttgaattaat 200  Q
    |||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9282644 attgtctctagtcggtaacctattgcaaaagagcctccaagcctaaatagagaccttcaagggaggggacatgtttttgccaaatttagtttgaattaat 9282743  T
Q  201 ttccacacaataagagttctgaataatgagcaaattatacgcacccctcacagagtaaccaccacaatggtg 272  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9282744 ttccacacaataagaattctgaataatgagcaaattatacgcacccctcacagagtaaccaccacaatggtg 9282815  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 10442071 - 10442155
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg 86  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||| |||||||||    
T  10442071 aaacggggcaaaaaaggaacaagtgatgagctgtttccaatccaccgcatccggtca-acaaaattgagcgtcatgagaaatgatg 10442155  T

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Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 18187060 - 18187322
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgctaaacatcagcaa 100  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||  |  || |||    
T  18187060 aaacggggaaagaaaggaacaagtgatgcgttgtttccaatccaccgcaaccagtcacacaaaattgagagtcatgagaaatgatgttacgcgacaccaa 18187159  T
Q  101 attgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagagaccttcaagggaggggacatgtttttgccaaatttagtttgaattaat 200  Q
    ||||||  |||||||||||||||| ||||  |||| ||||| ||||| | ||||||||||||||    || ||||| ||| ||||  ||| |||| ||      
T  18187160 attgtccttagtcggtaacctattaccaataagcctccaagccaaaacaaagaccttcaaggga----acctgtttgtgctaaatgaagtctgaagtagc 18187255  T
Q  201 ttccacacaataagagttctgaataatgagcaaattatacgcacccctcacagagtaaccaccacaa 267  Q
    || || || || ||||| |||| || ||||||| |||||| |||||||||| ||||||||| |||||    
T  18187256 tttcaaaccatgagagtcctgactagtgagcaagttatacacacccctcaccgagtaaccatcacaa 18187322  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 24838295 - 24838132
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgctaaacatcagcaa 100  Q
    |||| ||| ||||| | ||||||||||| | | |||||||||||||||| |||||||||||||||||||||||||| |||||||||||  |||||| |||    
T  24838295 aaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcatgagaaatgatgctgcacatcaccaa 24838196  T
Q  101 attgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagagaccttcaaggga 164  Q
    ||||||  || | ||||||||||| | ||  || | ||||| ||||||||||||||| ||||||    
T  24838195 attgtccttaattggtaacctattacgaataaggctccaagccaaaatagagaccttaaaggga 24838132  T

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Target: scaffold1458 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 122 - 207
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg 86  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||| |||||||||    
T  122 aaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg 207  T

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Target: scaffold0515 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2069 - 2154
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg 86  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||| |||||||||    
T  2069 aaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg 2154  T

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Target: scaffold0306 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2069 - 2154
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg 86  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||| |||||||||    
T  2069 aaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg 2154  T

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Target: scaffold0317 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 17639 - 17556
Alignment:
Q  1 aaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg 86  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||||| |||||||||    
T  17639 aaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccgcatctag--acacaaaattgagagtcatgagaaatgatg 17556  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 31851849 - 31851785
Alignment:
Q  11 agaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcat 75  Q
    ||||||||||| |||||| ||||| |||||||||||||  ||| |||| ||||||||||||||||    
T  31851849 agaaaggaacatgtgatgcgttgtgtccaatccaccgcggccaatcacgcaaaattgagagtcat 31851785  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 9947307 - 9947257
Alignment:
Q  23 gtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtc 73  Q
    |||||||| |||||||||||||| |||| | ||||||||||||||||||||    
T  9947307 gtgatgagctgtttccaatccactgcattctgtcacacaaaattgagagtc 9947257  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 15143250 - 15143295
Alignment:
Q  4 cgggggaagaaaggaacaagtgatgagttgtttccaatccaccgca 49  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||||    
T  15143250 cggggcaagaaaggaacaagtgatgtgttgtttccactccaccgca 15143295  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 15143530 - 15143630
Alignment:
Q  53 agtcacacaaaattgagagtcatgggaaatgatgctaaacatcagcaaattgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagag 152  Q
    ||||||||||||||| ||| | || ||||||||  || || ||| |||||||||  |||||| |||||| || | ||  |||| ||||||||||||||||    
T  15143530 agtcacacaaaattgtgaggcgtgagaaatgatcttacacgtcaccaaattgtccttagtcgataacctgttacgaataagcctccaagtcaaaatagag 15143629  T
Q  153 a 153  Q
    |    
T  15143630 a 15143630  T

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