View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_57 (Length: 286)
Name: NF10841_low_57
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 9453252 - 9453519
Alignment:
| Q |
1 |
gtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtcc |
100 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453252 |
gtcactaaggcagttacaacataaagtagtaaaacatgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtcc |
9453351 |
T |
|
| Q |
101 |
aattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgggttgctttgtttttggcacataatttttgtacacacgatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9453352 |
aattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactggattgctttgtttttggcacataatttttttacacacgatcat |
9453451 |
T |
|
| Q |
201 |
gttatgcagtaaatcatagggaatactaaatagttattccatagatgtgaatttctacactgatagat |
268 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453452 |
gttatgcagtaaatcatagggaatagtaaatagttattccatagatgtgaatttctacactgatagat |
9453519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 37684690 - 37684550
Alignment:
| Q |
3 |
cactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtccaa |
102 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37684690 |
cactaaggcagttacagcataaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtccaa |
37684591 |
T |
|
| Q |
103 |
ttgaaatttcaagggttgtaacaatttttcacatcatattt |
143 |
Q |
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| T |
37684590 |
ttgaaatttcaagggttgtaacaatttttcatatcatattt |
37684550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 38944553 - 38944286
Alignment:
| Q |
1 |
gtcactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
38944553 |
gtcactaaggcagttacaacagaaagcagtaaaatgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctttatactataagtcc |
38944454 |
T |
|
| Q |
101 |
aattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgggttgctttgtttttggcacataatttttgtacacacgatcat |
200 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
38944453 |
aattggaatttctagggttgtaacaatttttcacatcatatttggaactaacagctgggttgttttgtttttggcacataaattttgtacacaagatcat |
38944354 |
T |
|
| Q |
201 |
gttatgcagtaaatcatagggaatactaaatagttattccatagatgtgaatttctacactgatagat |
268 |
Q |
| |
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| T |
38944353 |
gctatgcagtaaatcatagggagtagtaagtagttatttcatggatgtgaatttctacacggatagat |
38944286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 18329050 - 18328788
Alignment:
| Q |
5 |
ctaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtccaatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
18329050 |
ctaaggcagttacaacagaaagtagtaaaatgtgaatgcattagaattcttatccaattatctacgtgcatatgtgcttctatatgttataagtccaatt |
18328951 |
T |
|
| Q |
105 |
gaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgggttgctttgtttttggcacataatttttgtacacacgatcatgtta |
204 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||| || |
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| T |
18328950 |
agaatttctagggttgtaacaatttttcacatcatatttggaactaacagatgggttgtttggtttttggcacataatttttgtacacaagatcatg-ta |
18328852 |
T |
|
| Q |
205 |
tgcagtaaatcatagggaatactaaatagttattccatagatgtgaatttctacactgatagat |
268 |
Q |
| |
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||| |||||||||||||| || ||| |||||||| ||| ||||||||||||||||| ||||||| |
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| T |
18328851 |
tgctgtaaatcatagggagtagtaagtagttatttcatggatgtgaatttctacacggatagat |
18328788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 21545741 - 21545541
Alignment:
| Q |
3 |
cactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtccaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21545741 |
cactaaggcagttacaacagaaagta---aaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtccta |
21545645 |
T |
|
| Q |
103 |
ttgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgggttgctttgtttttggcacataatttttgtacacacgatcatgt |
202 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
21545644 |
ttggaatttcaagggttgaaacaatttttcacatcatattcggaattaacagctgggttgcttggttttcggcacataatttttgtacacaagatcatgt |
21545545 |
T |
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| Q |
203 |
tatg |
206 |
Q |
| |
|
|||| |
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|
| T |
21545544 |
tatg |
21545541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 7499073 - 7499213
Alignment:
| Q |
3 |
cactaaggcagttacaacagaaagtagtaaaacgtgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtccaa |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7499073 |
cactaaggcagttacaacataaagtagtaaaacatgaatgcattagaattcttatccaattatctaggtgcatatgtgtttctatatgctataagtccaa |
7499172 |
T |
|
| Q |
103 |
ttgaaatttcaagggttgtaacaatttttcacatcatattt |
143 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7499173 |
ttggaatttcaagggttgtaacaatttttcatatcatattt |
7499213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 21545261 - 21545211
Alignment:
| Q |
218 |
agggaatactaaatagttattccatagatgtgaatttctacactgatagat |
268 |
Q |
| |
|
||||| || ||| ||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
21545261 |
agggagtagtaagtagttattcaatagatgtgaatttctacacggatagat |
21545211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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