View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_58 (Length: 284)
Name: NF10841_low_58
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 53579039 - 53578771
Alignment:
| Q |
9 |
gaggagcagagaaagggatcttaaactcttc---atcatcatc---atcactttgcattctctcttcatcagaatagtaattatctatttcttctggtgc |
102 |
Q |
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| T |
53579039 |
gaggtgcagagaaagggatcttaaactcttcttcatcatcatcatcatcactttgcattctctcttcatcagaatagtaattatctatttcttctggtgc |
53578940 |
T |
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| Q |
103 |
tacttgagccttccaatcaaaattagcaaaagtgtcacgtccacttgcaaaacgtttcatttgactcacatgtgttgctctttcctcaattgcatatttt |
202 |
Q |
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| T |
53578939 |
tacttgagccttccaatcaaaattagcaaaagtgtcacgtccacttgcaaaacgtttcatttgactcacatgtgttgctctttcctcaattgcatatttt |
53578840 |
T |
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| Q |
203 |
ttatcttgaactgcacatgcatctgatttccttcttccttcagattttggtttcccaacatgaaacaac |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53578839 |
ttatcttgaactgcacatgcatctgatttccttcttccttcagattttggtttcccaacatgaaacaac |
53578771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 18818414 - 18818544
Alignment:
| Q |
50 |
tcactttgcattctctcttcatcagaatagtaattatctatttcttctggtgctacttgagccttccaatcaaaattagcaaaagtgtc---acgtccac |
146 |
Q |
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|||| |||||| ||||||||||| |||| ||||||| |||||| |||| |||| |||||||||||||||||| || |||||||||| || |||| |
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| T |
18818414 |
tcaccttgcatcctctcttcatccaaataataattatatatttcctctgcaactacatgagccttccaatcaaaactaacaaaagtgtcgcaacaaccac |
18818513 |
T |
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| Q |
147 |
ttgcaaaacgtttcatttgactcacatgtgt |
177 |
Q |
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| T |
18818514 |
ttgcaaaacttttcaatcgactcacatgtgt |
18818544 |
T |
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