View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_6 (Length: 467)
Name: NF10841_low_6
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 51114232 - 51114683
Alignment:
| Q |
17 |
acatatatgtatttagttacggatataacttatttatcccttttattatattatacgctagactagatgtttttattnnnnnnnnnnnnnn--atggtct |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
51114232 |
acatatatgtatttagttacggatttaacttatttatcccttttattatattatatgctagactagatgtttttatttgtgtgtgtgtgagtgatggtct |
51114331 |
T |
|
| Q |
115 |
tctttggttggaattggaaaggtaacaatttagttaagcattcaagctcggtttttattttgattcaacttgcaagctgtaaattttggctatggtttgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51114332 |
tctttggttggaattggaaaggtaacaatttagttaagcattcaagctcggtttttattttgattcaacttgcaagctgtaaattttggctatggtttgg |
51114431 |
T |
|
| Q |
215 |
tgttaatattattctagtacaaatttaattcttgattatctctttcnnnnnnnagatatctgagaaaatattctgctaattattcatgtccattggtgtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51114432 |
tgttaatattattctagtacaaatttaattcttgattatctctttctttttttagatatctgagaaaatattctgcaaattattcatgtccattggtgtt |
51114531 |
T |
|
| Q |
315 |
tgaaccttatttatgtgttggattagaagttagatagaatgcatgcttgaaa----------tgtagttcatttcacacggcaaataaggtacaaaacaa |
404 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51114532 |
tgaaccttatttatttgttggattagaagttagatagaatgcatgcttgaaatgtgtatgtctgtagttcatttcacacggcaaataagatacaaaacaa |
51114631 |
T |
|
| Q |
405 |
aatgaaacctacattaaaatgtgacatcggagtgtgttcttctcaagtctct |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51114632 |
aatgaaacctacattaaaatgtgacatcggagtgtgttcttctcaagtctct |
51114683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 546450 - 546367
Alignment:
| Q |
109 |
tggtcttctttggttggaattggaaaggtaacaatttagttaagcattcaagctcggtttttattttgattcaacttgcaagct |
192 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||||||| |||| ||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
546450 |
tggtcttctttagaaagaattggaaaggaaacaatttagtttagcagtcaagcttgatctttattttgattcaacttgcaagct |
546367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 552621 - 552568
Alignment:
| Q |
204 |
ctatggtttggtgttaatattattctagtacaaatttaattcttgattatctctttc |
260 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
552621 |
ctatggtttggtgttaatattattc---tgcaaatttaattcttgattgtctctttc |
552568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 1553995 - 1554033
Alignment:
| Q |
111 |
gtcttctttggttggaattggaaaggtaacaatttagtt |
149 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1553995 |
gtcttctttggttggaattggaaagattacaatttagtt |
1554033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University