View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_64 (Length: 277)
Name: NF10841_low_64
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_64 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 41479660 - 41479415
Alignment:
| Q |
20 |
aacagtttccttctca--gagaatggtagttgccacactaatgtctgaagatctttcttgaagctaatttttaaaaatacagttcaaactaatgatttct |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479660 |
aacagtttccttctcaaagagaatggtagtcgccacactaatgtctgaagatctttcttgaagctaatttttaaaaatacagttcaaactaatgatttct |
41479561 |
T |
|
| Q |
118 |
tattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479560 |
tattgtttggaaataatgtaatgatggataatataatgatttatttctatggccaggtatgatttcaaatgaatttaacttaaatgtttcaagacaaaaa |
41479461 |
T |
|
| Q |
218 |
tttaaaccatactacaaagagagacaattgataccacatgcctttg |
263 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479460 |
tttaaaccaaactacaaagagagacaattgataccacatgcctttg |
41479415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 41487528 - 41487445
Alignment:
| Q |
171 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactacaaagagagacaattgataccac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
41487528 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacaggagacgattgataccac |
41487445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 41486677 - 41486578
Alignment:
| Q |
148 |
atataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactac-aaagagagacaatt |
246 |
Q |
| |
|
|||||||| ||||||| || | |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
41486677 |
atataatgctttatttttaggttcaggtacgatttcaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaatt |
41486586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 40753830 - 40753788
Alignment:
| Q |
184 |
aaatgaatttaacttaaatgtttcaagacaaaaatttaaacca |
226 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40753830 |
aaatgaatttaacttaaatgtttcgagacaaaaatttaaacca |
40753788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University