View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_67 (Length: 275)

Name: NF10841_low_67
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_67
NF10841_low_67
[»] chr4 (9 HSPs)
chr4 (1-264)||(14173939-14174198)
chr4 (1-264)||(14178693-14178952)
chr4 (1-264)||(28606910-28607169)
chr4 (1-264)||(28611672-28611931)
chr4 (1-264)||(44161588-44161845)
chr4 (1-258)||(11104477-11104728)
chr4 (1-204)||(48826802-48827000)
chr4 (1-97)||(48708160-48708256)
chr4 (12-105)||(24726288-24726381)
[»] chr8 (4 HSPs)
chr8 (1-264)||(12930678-12930937)
chr8 (1-264)||(12935424-12935683)
chr8 (35-105)||(26504985-26505055)
chr8 (13-103)||(15588948-15589038)
[»] chr1 (1 HSPs)
chr1 (1-264)||(34907141-34907400)
[»] chr7 (5 HSPs)
chr7 (1-264)||(37040530-37040789)
chr7 (1-255)||(15290243-15290489)
chr7 (1-205)||(12099060-12099260)
chr7 (48-260)||(12082021-12082227)
chr7 (57-105)||(2757370-2757418)
[»] chr5 (3 HSPs)
chr5 (1-258)||(42911094-42911346)
chr5 (1-250)||(29106979-29107224)
chr5 (1-82)||(38997239-38997320)
[»] chr2 (1 HSPs)
chr2 (1-264)||(8539185-8539446)
[»] chr3 (1 HSPs)
chr3 (121-259)||(51302168-51302306)
[»] chr6 (2 HSPs)
chr6 (1-82)||(2100301-2100379)
chr6 (75-105)||(2100723-2100753)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 14174198 - 14173939
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174198 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 14174099  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14174098 tctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagat 14174003  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14174002 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 14173939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 14178952 - 14178693
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178952 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 14178853  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14178852 tctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagat 14178757  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14178756 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 14178693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28606910 - 28607169
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606910 tatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 28607009  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28607010 tctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagat 28607105  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28607106 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 28607169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 28611672 - 28611931
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611672 tatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 28611771  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28611772 tctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagat 28611867  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28611868 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 28611931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 44161845 - 44161588
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  44161845 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctctccac 44161748  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44161747 tctcttacacacaca----agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagagat 44161652  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  44161651 gatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctc 44161588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 11104728 - 11104477
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    |||||||| | ||||| |||||||||  ||||| ||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  11104728 tatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctccac 11104630  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  11104629 tctcttacacacaa-----agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagat 11104535  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 258  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11104534 gatatccacccggtgtatttttcctacactctctggatttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 48826802 - 48827000
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |    
T  48826802 tatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctcttcgc 48826900  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| ||||||||||||||||||||||||||    
T  48826901 tctct----tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagagat 48826996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 48708160 - 48708256
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 97  Q
    |||||||| || ||||| || ||||||| || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708160 tatttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  12 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 105  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 12930937 - 12930678
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930937 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 12930838  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12930837 tctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagat 12930742  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12930741 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 12930678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 12935683 - 12935424
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935683 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 12935584  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||    
T  12935583 tctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagagat 12935488  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12935487 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 12935424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
Q  35 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 105  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 15589038 - 15588948
Alignment:
Q  13 aaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 103  Q
    ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| ||| ||||||||||    
T  15589038 aaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaacattttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 34907400 - 34907141
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907400 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 34907301  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  34907300 tctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagat 34907205  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34907204 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 34907141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 37040530 - 37040789
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37040530 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttctccac 37040629  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37040630 tctctcacacacaca----agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagat 37040725  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37040726 gatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctc 37040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 15290489 - 15290243
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||    
T  15290489 tatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattctctccac 15290390  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| | |  |||||||||||||||||||||    
T  15290389 tctcttacacacaca----agagatacaatatagtgtttcc-gtgagacccactcctattcgaatgctattatttca--gcacctagaagttatagagat 15290297  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatt 255  Q
    |||||||||||||||||||||| ||||||| |||||||||| |||||||||||||    
T  15290296 gatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 12099260 - 12099060
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||| ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  12099260 tattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctccac 12099161  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| |||||||||||||    
T  12099160 tctct----tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagat 12099065  T
Q  201 gatac 205  Q
    |||||    
T  12099064 gatac 12099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
Q  48 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgag 147  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||              |||||||||||||||||||||   ||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa----agagatacaatatagtgtttctaatgag 12082133  T
Q  148 acctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaac 247  Q
    ||   || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||    
T  12082132 actcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaac 12082034  T
Q  248 actctatttttct 260  Q
    |||||| ||||||    
T  12082033 actctaattttct 12082021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 2757370 - 2757418
Alignment:
Q  57 aaaatattccactatattaaagaatattacaatattctctccactctct 105  Q
    |||||||||||||||||| || |||||| || |||||||||||||||||    
T  2757370 aaaatattccactatatttaaaaatattgcactattctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 42911094 - 42911346
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  42911094 tatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctccac 42911192  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  42911193 tctctcacacacaca----aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagat 42911288  T
Q  201 gatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 258  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  42911289 gatacccacccagtgtattttttccacactctctggatttactcaacactctattttt 42911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 29106979 - 29107224
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106979 tatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 29107078  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 200  Q
    |||||              |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  29107079 tctct----tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagat 29107173  T
Q  201 gata-cccacccggtgtatttttcccacactctctggatttactcaacact 250  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  29107174 gataccccacccaatgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 38997239 - 38997320
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 82  Q
    ||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997239 tattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8539446 - 8539185
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 100  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||    
T  8539446 tatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctccac 8539347  T
Q  101 tctctnnnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 197  Q
    |||||              ||||||||||   |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| ||||||||||    
T  8539346 tctct----tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttataga 8539252  T
Q  198 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 264  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||    
T  8539251 gatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctc 8539185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
Q  121 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 220  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  221 ttcccacactctctggatttactcaacactctatttttc 259  Q
    |  ||||||||||||||||||||||| ||||||||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2100301 - 2100379
Alignment:
Q  1 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 82  Q
    ||||||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100301 tatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  75 aaagaatattacaatattctctccactctct 105  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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