View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_7 (Length: 464)
Name: NF10841_low_7
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 54619003 - 54618565
Alignment:
| Q |
18 |
cacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggccggtttgcgtaaacaaaaatt |
117 |
Q |
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| T |
54619003 |
cacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggccggtttgcgtaaacaaagatt |
54618904 |
T |
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| Q |
118 |
gtgttcattgtattgcgatttatgattcttttattcnnnnnnnnnnn-----actaatgattcttttatcattttgttactagttgttcttacagattat |
212 |
Q |
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| T |
54618903 |
gtgttcattgtattgcgatttatgattcttttattcttttttctttttttttactaatgattcttttatcattttgttactagttgttcttacagattat |
54618804 |
T |
|
| Q |
213 |
aannnnnnngtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagacccatttaagaatataatttatgttttttata |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
54618803 |
aatttttttgtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagatccatttaaggatataatttatgttttttata |
54618704 |
T |
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| Q |
313 |
cgcatcggtcgggaatcgaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgttaatcgattataacttacta |
412 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54618703 |
cgcatcggtcgggaatcaaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgttaatcgattataacttacta |
54618604 |
T |
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| Q |
413 |
gttaagctacacaaagattgtgttaataaatatcgatct |
451 |
Q |
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| T |
54618603 |
gttaagctacacaaagattgtgttaataaatatcgatct |
54618565 |
T |
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