View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_70 (Length: 269)
Name: NF10841_low_70
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 49115987 - 49115748
Alignment:
| Q |
19 |
accttaagaaaaatgtggaacatatttatataatgggtggaggtgtaaggtcaagcaaccctactggttgttgcccaaaaaatgcttcatctaactgtgt |
118 |
Q |
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| T |
49115987 |
accttaagaaaaatgtggaacatatttatataatgggtggaggtgtaaggtcaagcaaccctactggttgttgcccaaaaaatgcttcatctaactgtgt |
49115888 |
T |
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| Q |
119 |
gcctcgacagtgtggtgaccatggaaatatgtttacagattataatactaacccttatgcagaattcaatatctttggagacccttttgcagcttaccag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49115887 |
gcctcgacagtgtggtgaccatggaaatatgtttacagattataatactaacccttatgcagaattcaatatctttggagacccttttgcagcttaccag |
49115788 |
T |
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| Q |
219 |
gtcatacaaattcttcaatactactccttacttttttcat |
258 |
Q |
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| T |
49115787 |
gtcatacaaattcttcaatactactccatacttttttcat |
49115748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 49103689 - 49103478
Alignment:
| Q |
19 |
accttaagaaaaatgtggaacatatttatataatgggtggaggtgtaaggtcaagcaaccctactggttgttgcccaaaaaatgcttcatctaactgtgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||||||| ||||| |
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| T |
49103689 |
accttaagaaaaatgtggaacatatttatataatgggtggaggtgtaagatcaagcaatccaactggttgttgtcccaaaaatgcttcatct---tgtgt |
49103593 |
T |
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| Q |
119 |
gcctcgacagtgtggtgaccatggaaatatgtttacagattataatactaacccttatgcagaattcaatatctttggagacccttttgcagcttaccag |
218 |
Q |
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||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |
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| T |
49103592 |
gcctcagcagtgtggtgaccgtggaaatttgtttacagattttaatactaacccttatgcagaatacaacatctttggagacccttttgcagcataccag |
49103493 |
T |
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| Q |
219 |
gtcatacaaattctt |
233 |
Q |
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|||||||| |||||| |
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| T |
49103492 |
gtcatacacattctt |
49103478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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