View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_73 (Length: 264)
Name: NF10841_low_73
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 40451381 - 40451124
Alignment:
| Q |
1 |
aaatactacttgtgtgttaccccgttgtttctcaacttctcactcattgactaaactatcgttacaacttggcggctttacactatttattcctaccggt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40451381 |
aaataccacttgtgtgttaccccgttgtttctcaacttctcactcattgactaaactatcattacaacttggcggctttacactatttattcctaccggt |
40451282 |
T |
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| Q |
101 |
attcgattccctaccctcaagactttaaatctttcatatgctacctttgaaagtgacaagtcaagtaaacaannnnnnnctgaggggtgccctgtcctac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
40451281 |
attctattccctaccctcaagactttaaatctttcatatgctacctttgaaagtgacaagtcaattaaacaatttttttctgaggggtgccctgtcctac |
40451182 |
T |
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| Q |
201 |
aagatttgactttgaactattgctattggttgtacatcaagcaaatcacctttgctac |
258 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40451181 |
aagaattgactttgaactattgctattggttgtacatcaagcaaatcaccattgctac |
40451124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 40275929 - 40276187
Alignment:
| Q |
1 |
aaatactacttgtgtgttaccccgttgtttctcaacttctcactcattgactaaactatcgttacaacttggcggctttacactatttattcctaccggt |
100 |
Q |
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|||||| ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| | | |
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| T |
40275929 |
aaataccacttgtgtgttacgccgtagtttctcaacatctcactcattgactaaactatcgttacatcttggtggctttactctatttattcctacagat |
40276028 |
T |
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| Q |
101 |
attcgattccctaccctcaagactttaaatctttcatatgctacctttgaaagtgacaagtcaagtaaacaa-nnnnnnnctgaggggtgccctgtccta |
199 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||| |
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| T |
40276029 |
attcgattccctaccctcaaaactttaaatcgttcatatgctacctttgaaagtgacaaatcaattgaacaattttttttctgaggggtgccctgtccta |
40276128 |
T |
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| Q |
200 |
caagatttgactttgaactattgctattggttgtacatcaagcaaatcacctttgctac |
258 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
40276129 |
caagaattgactttgaactattgctgttggttgtacatcaagcaaatcaccattgctac |
40276187 |
T |
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