View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_74 (Length: 262)
Name: NF10841_low_74
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_74 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 47990512 - 47990739
Alignment:
| Q |
16 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47990512 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
47990611 |
T |
|
| Q |
116 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttcaaaggcatgcgctcttatctaatatct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47990612 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttcaaaggcatgcgctcttatctaatatct |
47990711 |
T |
|
| Q |
216 |
cacgaattttactattaatgttaggttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47990712 |
cacgaattttactattaatgttaggttt |
47990739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University