View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_75 (Length: 261)
Name: NF10841_low_75
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_75 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 36640666 - 36640902
Alignment:
| Q |
18 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36640666 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
36640765 |
T |
|
| Q |
118 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36640766 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagc--cacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
36640863 |
T |
|
| Q |
218 |
acgttttgctaaagcatctgcaaatgagttcatctctct |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36640864 |
acgttttgctaaagcatctgcaaatgagttcatttctct |
36640902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 36633302 - 36633536
Alignment:
| Q |
22 |
cagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36633302 |
cagcaacacaatcccacctatcagctaaacacaccccaccacaacagcatccgaatcagtcaggacagcagcaaacagacagatatacaaatagatttct |
36633401 |
T |
|
| Q |
122 |
ctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgt |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
36633402 |
ctatttctgtaaaataaattttgaattgcaaactagcaagcctcacacactttaatccataggccaccaaattctctgcccctccatattcacgccactt |
36633501 |
T |
|
| Q |
222 |
tttgctaaagcatctgcaaatgagttcatctctct |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36633502 |
tttgctaaagcatctgcaaatgagttcatttctct |
36633536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University