View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_77 (Length: 256)
Name: NF10841_low_77
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 8340510 - 8340740
Alignment:
| Q |
19 |
aattgtcatccttattagcgagcaaggaga---tttttggaaccacgttgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggaa |
115 |
Q |
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| T |
8340510 |
aattgccatccctattagcgagcaaggagaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggaa |
8340609 |
T |
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| Q |
116 |
acttgttgattatgcattcgaaattacaatgttatttcttctgtctttttcagagcttatttcatgtaggtccttgcttggggaggaactagtcgtagtc |
215 |
Q |
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| T |
8340610 |
acttgttgattatgcattcgaaattacaatgttatttcttctgtctttttcagagcttatttcatgtaggtccttgcttggggagaaactagtcgtcgtc |
8340709 |
T |
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| Q |
216 |
gaaatagaatgacttgactatcaactctctg |
246 |
Q |
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| T |
8340710 |
gaaatagaatgacttgactatcaactctctg |
8340740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 8350430 - 8350616
Alignment:
| Q |
48 |
atttttggaaccacgttgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggaaacttgttgattatgcattcgaaattacaatgt |
147 |
Q |
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| T |
8350430 |
atttttgggaccacatagaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttgaatatgcattcgaaattacaatgt |
8350529 |
T |
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| Q |
148 |
tatttcttctgtctttttcagagcttatttcatgtaggt--ccttgcttggggaggaactagtcgtagtcgaaatagaatgacttga |
232 |
Q |
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| T |
8350530 |
tatttcttctgtctttttcagagcttatttcatgtaagtaacctagcatggggaggaactagtcgtggtctaaatagtatgacttga |
8350616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 8353536 - 8353666
Alignment:
| Q |
48 |
atttttggaaccacgttgaactttgaaaattcttcaatgtatgcatatatttt-gtggctgctttggaaacttgttgattatgcattcgaaattacaatg |
146 |
Q |
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|||||||| ||||| | |||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||| |||||| | |||||||||||||| | |
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| T |
8353536 |
atttttgggaccacatagaactttgaaaattcttctacgtatgcatatatttttgtggctgctttggacacttgctgattaagtattcgaaattacaacg |
8353635 |
T |
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| Q |
147 |
ttatttcttctgtctttttcagagcttattt |
177 |
Q |
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| T |
8353636 |
ttatttcttctgtctttttcagagcttattt |
8353666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 8256216 - 8256267
Alignment:
| Q |
126 |
tatgcattcgaaattacaatgttatttcttctgtctttttcagagcttattt |
177 |
Q |
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| T |
8256216 |
tatgtattcgatattacaatgttgtttcgtttgtctttttcagagcttattt |
8256267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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