View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_79 (Length: 255)
Name: NF10841_low_79
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 48814356 - 48814594
Alignment:
| Q |
1 |
tggttccaccaccaatgcatataaattgcacagactagctagttttacttggagcaaccaggccatgcaacatctcttggagaaagtgttttaaggactg |
100 |
Q |
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| T |
48814356 |
tggttccaccaccaatgcatataaattgcacagactagctagttttacttggagcaaccaggccatgcaacatctcttggagaaagtgttttaaggactg |
48814455 |
T |
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| Q |
101 |
gatttctctcaaagaaattcgctggtctcagctcaaatgaagtgctcaatagtggcattattgggaaatcttcttgtgctggaacatgatgaattccaac |
200 |
Q |
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| T |
48814456 |
gatttctctcaaagaaattcgttggtctcagctcaaatgaagtgctcaatagtggcattattgggaaatcttcttgtgctggaacatgatgaattccaac |
48814555 |
T |
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| Q |
201 |
tacatgccacatcacaatgtccttgttcacaatgtctct |
239 |
Q |
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| T |
48814556 |
tacatgccacatcacaatgtccttgttcacaatgtctct |
48814594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 48787938 - 48788157
Alignment:
| Q |
16 |
tgcatataaattgcacagactagctagttttacttggagcaaccaggccatgcaacatctcttggagaaagtgttttaaggactggatttctctcaaaga |
115 |
Q |
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| T |
48787938 |
tgcaaataaattgcacacattctctagttttaattggagcaaccaggccatggaacatcttttggagaaagtgttttaaggactggattcctctcaaaga |
48788037 |
T |
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| Q |
116 |
aattcgctggtctcagctcaaatgaagtgctcaatagtggcattattgggaaatcttcttgtgctggaacatgatgaattccaactacatgccacatcac |
215 |
Q |
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| T |
48788038 |
aattggttggcctgagctcaaatgaagtgctcaatagtggcattattgggaaatcttcttgtgctggaacatgatgaattccaactacatgccacatcac |
48788137 |
T |
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| Q |
216 |
aatgtccttgttcacaatgt |
235 |
Q |
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|||||||||||||||||||| |
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| T |
48788138 |
aatgtccttgttcacaatgt |
48788157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 48835944 - 48835742
Alignment:
| Q |
43 |
ttttacttggagcaaccaggccatgcaacatctcttggagaaagtgttttaaggactggatttctctcaaagaaattcgctggtctcagctcaaatgaag |
142 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||| ||||||| || ||||| |||||||||||||| | ||| |||| ||||||| || |
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| T |
48835944 |
ttttacttggggcaaccaggccatttaacatctcttggagaaagtattttaagaacaggattcctctcaaagaaattagttggcctcaactcaaatccag |
48835845 |
T |
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| Q |
143 |
tgctcaatagtggcattattgggaaatcttcttgtgctggaacatgatgaattccaactacatgccacatcacaatgtccttgttcacaatgtctctgct |
242 |
Q |
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| T |
48835844 |
tgctcaatagtggcattatggggaaatcttcctgtgctggaacatgatgaattccaactacatgccacatcacaatgtccttgttcacaatgtctctgtt |
48835745 |
T |
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| Q |
243 |
cct |
245 |
Q |
| |
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||| |
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| T |
48835744 |
cct |
48835742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 48797661 - 48797881
Alignment:
| Q |
21 |
ataaattgcacagactagctagttttacttggagcaacc--aggccatgcaacatctcttggagaaagtgttttaaggactggatttctctcaaagaaat |
118 |
Q |
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||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| ||||||| || |||| ||||||||||||| |
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| T |
48797661 |
ataaattgcacaggctagctagttttaattggagcaaccccaggccatggaacatcttttggagaaagtattttaagaacatgattcctctcaaagaaat |
48797760 |
T |
|
| Q |
119 |
tcgctggtctcagctcaaatgaagtgctcaatagtggcattattgggaaatcttcttgtgctggaacatgatgaattccaactacatgccacatcacaat |
218 |
Q |
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| | ||| |||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48797761 |
tagatggcctcaactcaaatcgagtgctcaatagtggcattatggggaaatctttctgtgctggaacatgatgaattccaactacatgccacatcacaat |
48797860 |
T |
|
| Q |
219 |
gtccttgttcacaatgtctct |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
48797861 |
gtccttgttcacaatgtctct |
48797881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 15823973 - 15824173
Alignment:
| Q |
39 |
ctagttttacttggagcaaccaggccatgcaacatctcttggagaaagtgttttaaggactggatttctctcaaagaaattcgctggtctcagctcaaat |
138 |
Q |
| |
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||||||| |||||| ||||||| ||||| ||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||| || ||||||||| |
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| T |
15823973 |
ctagtttgacttggggcaaccatgccatacaacatctccaggagaaagggttttaaggacaggattcctctcaaaaaaattggttggcctgagctcaaat |
15824072 |
T |
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| Q |
139 |
gaagtgctcaatagtggcattattgggaaatcttcttgtgctggaacatgatgaattccaactacatgccacatcacaatgtccttgttcacaatgtctc |
238 |
Q |
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||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |
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| T |
15824073 |
gaagtgctcaatagtggcattattgggaagtcttcctgtgttggaacatgatgaattcccactacatgccacattactatgtccttgttcacaatgtctc |
15824172 |
T |
|
| Q |
239 |
t |
239 |
Q |
| |
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| |
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| T |
15824173 |
t |
15824173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 48914472 - 48914407
Alignment:
| Q |
54 |
gcaaccaggccatgcaacatctcttggagaaagtgttttaaggactggatttctctcaaagaaatt |
119 |
Q |
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| T |
48914472 |
gcaaccaggccatttaacatctcttggagaaaatattttaagaagaggattcctctcaaagaaatt |
48914407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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