View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_80 (Length: 253)
Name: NF10841_low_80
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_80 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 46522408 - 46522630
Alignment:
| Q |
19 |
attaggtacattattattaatgacccttgtggagagctatttgagccggaaagatacatccagtatttagatttaaatggttggttacaagagaacaatt |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
46522408 |
attagatacattattattaatgacccttgtggagagctatttgagccggaaagatacatccagtatttagagttaaatggtt----acaggagaacaatt |
46522503 |
T |
|
| Q |
119 |
gttctaaatacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaacttcttgatgaattca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46522504 |
gttctaaatacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgtagataagctcagaacttcttgatgaattca |
46522603 |
T |
|
| Q |
219 |
taaatgtgattacttatttcctatgct |
245 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
46522604 |
taaatgtgattacttatttcctctgct |
46522630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 46529840 - 46530063
Alignment:
| Q |
19 |
attaggtacattattattaatgacccttgtggagagctattt-gagccggaaagatacatccagtatttagatttaaatggttggttacaagagaacaat |
117 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
46529840 |
attaggtacgttattattagtgacccttgtggagagctattttgaaccagaaagatacatccagtatttagagttaaatggtt----acaggagaacaat |
46529935 |
T |
|
| Q |
118 |
tgttctaaatacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaacttcttgatgaattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46529936 |
tgttctaaatacaacacacgcaactactaagaacccggaaatagacatagcagcaagattatttcatttgtagataagctcagaacttcttgatgaattc |
46530035 |
T |
|
| Q |
218 |
ataaatgtgattacttatttcctatgct |
245 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
46530036 |
ataaatgtgattacttatttcctctgct |
46530063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 46324478 - 46324359
Alignment:
| Q |
126 |
atacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaacttcttgatgaattcataaatgt |
225 |
Q |
| |
|
|||||||||| |||||||||||||| || | ||||||| |||| ||| ||||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
46324478 |
atacaacacatgcaactactaagaatcgtgtaatagacttagcggcatcgttatttcatcatcaggtcagctcagaacttcttgatgaattcataaatgt |
46324379 |
T |
|
| Q |
226 |
gattacttatttcctatgct |
245 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
46324378 |
gattactgatttcctctgct |
46324359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 46519220 - 46519283
Alignment:
| Q |
177 |
tatttcatttgcagataagctcagaacttcttgatgaattcataaatgtgattacttatttcct |
240 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
46519220 |
tatttcatttgcagatcagctcagaatttcttgatgaattcgtaaatgtgattactaatttcct |
46519283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 46481416 - 46481467
Alignment:
| Q |
189 |
agataagctcagaacttcttgatgaattcataaatgtgattacttatttcct |
240 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
46481416 |
agataagatcagaacttcttgataaaatcataaatgtgattactgatttcct |
46481467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 46328842 - 46328796
Alignment:
| Q |
194 |
agctcagaacttcttgatgaattcataaatgtgattacttatttcct |
240 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||||| ||||||| |
|
|
| T |
46328842 |
agctcagaacttcatgatgaattcgtaaatgtaattactgatttcct |
46328796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 7493318 - 7493195
Alignment:
| Q |
103 |
ttacaagagaacaattgttctaaatacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaa |
202 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7493318 |
ttacaagtgaacaattgttctaaatagaacacacgcaactactaagaaccaggaattagacttagcagcaagattatttcatttgcagatcagctcagaa |
7493219 |
T |
|
| Q |
203 |
cttcttgatgaattcataaatgtg |
226 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
7493218 |
ctttttgatgaattcataaatgtg |
7493195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 7476628 - 7476508
Alignment:
| Q |
103 |
ttacaagagaacaattgttctaaatacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaa |
202 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
7476628 |
ttacaagtgaacaattgttctaaatagaacacacgcaactactaagaaccaggaattagacttagcagcaagattatttcattagcagatcagctcagaa |
7476529 |
T |
|
| Q |
203 |
cttcttgatgaattcataaat |
223 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
7476528 |
ctttttgatgaattcataaat |
7476508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University