View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_81 (Length: 253)
Name: NF10841_low_81
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 28496659 - 28496432
Alignment:
| Q |
18 |
attatgaggttgctcagttcgtgtgatgattttataaccatcctttaccaagtaaccatcaagagaattaagagtccaaactcatttatccacaacataa |
117 |
Q |
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| T |
28496659 |
attatgaggttgctcagtttgtgtgatgattttataaccatcctttaccaagtaaccatcaagagaattaagagtccaaactcatttatccacaacataa |
28496560 |
T |
|
| Q |
118 |
tcttgcaaaaa-taaatatctaaacgaaaaacacgctagcccaactgctctttctccgaagcaaacatacaccttctccaacggcacctttgcccatcta |
216 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28496559 |
tcttgcaaaaaataaatatctaaacgagaaacacgctagcccaactgctctttctccgaagcaaacatacaccttctccaacgacacctttgcccatcta |
28496460 |
T |
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| Q |
217 |
ccccccaaacttgcatcctcatctctgc |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
28496459 |
ccccccaaacttgcatcctcatctctgc |
28496432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 28497405 - 28497176
Alignment:
| Q |
18 |
attatgaggttgctcagttcgtgtgatgattttataaccatcctttaccaagtaaccatcaagagaattaagagtccaaactcatttatccacaacataa |
117 |
Q |
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|||||||||||| |||||| | |||||||||| |||||||||||||| ||||||||||||| || |||||||| ||| ||||||||||||||| ||| |
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| T |
28497405 |
attatgaggttgttcagtttgcgtgatgatttgataaccatcctttatcaagtaaccatcaccggagttaagagttcaatctcatttatccacaaattaa |
28497306 |
T |
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| Q |
118 |
tcttgcaaaaataaatat--ctaaacgaaaaacacgctagcccaactgctctttctccgaagcaaacatacaccttctccaacggcacctttgcccatct |
215 |
Q |
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| T |
28497305 |
tcttgcaaaaaaaaaaaaaactaaaagagaaacacgctagcccaactgctctccctccgaagcaaaaatacaccttctccaacgccacctttgcccatct |
28497206 |
T |
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| Q |
216 |
acc-ccccaaacttgcatcctcatctctgc |
244 |
Q |
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||| ||||||||||||||| |||||||||| |
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| T |
28497205 |
acccccccaaacttgcatcttcatctctgc |
28497176 |
T |
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