View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_83 (Length: 251)
Name: NF10841_low_83
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_83 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10400518 - 10400279
Alignment:
| Q |
1 |
tcaatctttgataattattctgaggtgaaaccctctcaactatattatacattagttgagaggagtacctaatagaaaacttgcaagttgttgcaccaat |
100 |
Q |
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| T |
10400518 |
tcaatctttgataattattctgaggtgaaaccctctcaactatattatacattagttgagaggagtacctaatagaaaacttgcaatttgttgcaccaat |
10400419 |
T |
|
| Q |
101 |
ttccatgtcatagtcacatgatgttcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgtatgctt |
200 |
Q |
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| T |
10400418 |
ttccatgtcatagtcacatgatgttcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgtatgctt |
10400319 |
T |
|
| Q |
201 |
tgccagaactgttaattaaatctagcaatttatgattcat |
240 |
Q |
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| T |
10400318 |
tgccagaactattaattaaatctagcaatttatgattcat |
10400279 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 11005520 - 11005453
Alignment:
| Q |
128 |
tctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
195 |
Q |
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| T |
11005520 |
tctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgagtcatgta |
11005453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 11015848 - 11015781
Alignment:
| Q |
128 |
tctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
195 |
Q |
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| T |
11015848 |
tctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgagtcatgta |
11015781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 21198868 - 21198796
Alignment:
| Q |
123 |
gttcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
195 |
Q |
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|||| |||||||| || || ||||||||||| |||||||||||| |||||||||| || |||| ||||||| |
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| T |
21198868 |
gttcctctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgcgtcatgta |
21198796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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