View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_88 (Length: 249)

Name: NF10841_low_88
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_88
NF10841_low_88
[»] chr6 (1 HSPs)
chr6 (1-244)||(1529131-1529369)
[»] chr5 (2 HSPs)
chr5 (1-244)||(41785200-41785440)
chr5 (12-65)||(4790114-4790165)
[»] chr3 (1 HSPs)
chr3 (1-245)||(1127454-1127695)
[»] chr1 (1 HSPs)
chr1 (1-244)||(51132027-51132267)
[»] chr7 (2 HSPs)
chr7 (1-245)||(41713542-41713783)
chr7 (10-41)||(38316073-38316104)
[»] chr4 (2 HSPs)
chr4 (12-66)||(45772932-45772986)
chr4 (5-60)||(45772257-45772312)
[»] chr8 (1 HSPs)
chr8 (12-65)||(27322483-27322534)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1529369 - 1529131
Alignment:
Q  1 atgatctgtccacaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgcaaatcagccacaaacataaggaattttcgaaattct 100  Q
    |||| ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  1529369 atgacctgtccacaccatatattttccccacatcttcttca--------agaatgcaaatctgcaaatcagccacgaacagaaggaattttcgaaattct 1529278  T
Q  101 aatatacacatcttactatttgacttttcaaccagctaagtactctccattgtatttgaaatcttttgttcagt---taatcgttctattttcttagtga 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  1529277 aatatacacatcttactatttgacttttcaatcagctaagtactctccattgtatttgaaatcatttgttcagttaataatcgttctattttcttagtga 1529178  T
Q  198 ccgcatgtcaaaccatccttttagagttttggaatcaaagtaagaat 244  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  1529177 ccgcatgtcaaaccatccttttggagttttggaatcaaagtaagaat 1529131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41785440 - 41785200
Alignment:
Q  1 atgatctgtccacaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgcaaatcagccacaaacataaggaattttcgaaattct 100  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||      |||||||||||||||||||| |||| |||||||||||||||||||    
T  41785440 atgacctgtccacaccatatattttccccacatcttcttcaacctcatg------caaatctgcaaatcagccacgaacagaaggaattttcgaaattct 41785347  T
Q  101 aatatacacatcttactatttgacttttcaaccagctaagtactctccattgtatttgaaatcttttgttcagt---taatcgttctattttcttagtga 197  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  41785346 aatatacacatcttactatttgacttttcaatcagctaaatactctccattgtatttgaaatcatttgttcagttaataatcgttctattttcttagtga 41785247  T
Q  198 ccgcatgtcaaaccatccttttagagttttggaatcaaagtaagaat 244  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41785246 ccgcatgtcaaaccatccttttggagttttggaatcaaagtaagaat 41785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 4790165 - 4790114
Alignment:
Q  12 acaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgca 65  Q
    |||| |||||||||||||||||| |||||| |||  ||||||||||||||||||    
T  4790165 acactatatattttccccacatcatcttcaacct--tgagaatgcaaatctgca 4790114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1127454 - 1127695
Alignment:
Q  1 atgatctgtccacaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgcaaatcagccacaaacataaggaattttcgaaattct 100  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||| |||      |||||||||||||||||||| |||| |||||||||| ||||||||    
T  1127454 atgacctgcccacaccatatattttccccacatcttcttcaacctcatg------caaatctgcaaatcagccacgaacagaaggaatttttgaaattct 1127547  T
Q  101 aatatacacatcttactatttgacttttcaaccagctaagtactctccattgtatttgaaatcttttgttcagt---taatcgttctattttcttagtga 197  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  1127548 aatatacacatcttactatttgacttttcaatcagctaaatagtctccattgtatttgaaatcatttgttcagttaataatcgttctattttcttagtga 1127647  T
Q  198 ccgcatgtcaaaccatccttttagagttttggaatcaaagtaagaatt 245  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  1127648 ccgcatgtcaaaccatccttttggagttttggaatcaaagtaagaatt 1127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 51132267 - 51132027
Alignment:
Q  1 atgatctgtccacaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgcaaatcagccacaaacataaggaattttcgaaattct 100  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||| |||      ||||||||||||||||| || |||| |||||||||||||||||||    
T  51132267 atgacctgttcacaccatatattttccccacatcttcttcaacctcatg------caaatctgcaaatcagcaacgaacagaaggaattttcgaaattct 51132174  T
Q  101 aatatacacatcttactatttgacttttcaaccagctaagtactctccattgtatttgaaatcttttgttcagt---taatcgttctattttcttagtga 197  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  51132173 aatatacacatcttactatttgacttttcaatcagctaaatactcttcattgtatttgaaatcatttgttcagttaataatcgttctattttcttagtga 51132074  T
Q  198 ccgcatgtcaaaccatccttttagagttttggaatcaaagtaagaat 244  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  51132073 ccgcatgtcaaaccatccttttggagttttggaatcaaagtaagaat 51132027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41713783 - 41713542
Alignment:
Q  1 atgatctgtccacaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgcaaatcagccacaaacataaggaattttcgaaattct 100  Q
    |||| ||| ||||||||||||||||||||| |||||||||| ||| |||      |||||||||||||||||||| |||| |||||||||| ||||||||    
T  41713783 atgacctgcccacaccatatattttccccatatcttcttcaacctcatg------caaatctgcaaatcagccacgaacagaaggaatttttgaaattct 41713690  T
Q  101 aatatacacatcttactatttgacttttcaaccagctaagtactctccattgtatttgaaatcttttgttcagt---taatcgttctattttcttagtga 197  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  41713689 aatatacacatcttactatttgacttttcaatcagctaaatagtctccattgtatttgaaatcatttgttcagttaataatcgttctattttcttagtga 41713590  T
Q  198 ccgcatgtcaaaccatccttttagagttttggaatcaaagtaagaatt 245  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  41713589 ccgcatgtcaaaccatccttttggagttttggaatcaaagtaagaatt 41713542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 38316073 - 38316104
Alignment:
Q  10 ccacaccatatattttccccacatcttcttca 41  Q
    ||||||||||||||||||||||||||||||||    
T  38316073 ccacaccatatattttccccacatcttcttca 38316104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 45772986 - 45772932
Alignment:
Q  12 acaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgcaa 66  Q
    |||| ||||||||||||| |||| |||||||||| |||| |||||||||||||||    
T  45772986 acactatatattttcccctcatcatcttcagcctcatgaaaatgcaaatctgcaa 45772932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 45772257 - 45772312
Alignment:
Q  5 tctgtccacaccatatattttccccacatcttcttcagcctgatgagaatgcaaat 60  Q
    |||| |||||| ||||||||||||| |||| |||||| ||| ||||||||||||||    
T  45772257 tctgcccacactatatattttcccctcatcatcttcaacctcatgagaatgcaaat 45772312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 27322534 - 27322483
Alignment:
Q  12 acaccatatattttccccacatcttcttcagcctgatgagaatgcaaatctgca 65  Q
    |||| |||||||||||||||||| |||||| |||  ||||||||||||||||||    
T  27322534 acactatatattttccccacatcatcttcaacct--tgagaatgcaaatctgca 27322483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University